- a -

• About() : InitMenuBar
• accept() : FileTypeDialog
• Acquire() : AdminRights
• Activate() : Tool
• ActivateOverlay() : OverlayManager
• ActivateTool() : ToolBar
• ActiveNodesChanged() : SceneWin , InspectorWidget
• ActiveToolChanged() : GLWin , ToolManager
• Add() : FastSphereRenderer , Scene , IndexedVertexArray , PointlistOverlay , ToolOptionEnum , WidgetPool , InfoSet , StarLoopDesc , AminoAcidSet , StarLoopDesc , SpatialOrganizer< ITEM, VEC > , GfxNode , GradientEdit , GradientPresetWidget , GfxNode , PresetEditor , PresetWidget
• add_scalar() : ImageStateImpl< T, D >
• AddAction() : ContextMenu , ToolBar
• AddAlignedSeq() : MMCifInfoStructRef
• AddAlignment() : SequenceViewer
• AddAllInclusiveBonds() : EntityView
• AddAltAtomPos() : EditorBase , ResidueImpl
• AddAtom() : Compound , Diag , ConnResEntry , GfxView , ChainView , EntityView , ResidueView
• AddAtomInternal() : EntityView
• AddAuthorsToCitation() : MMCifInfo
• AddBioUnit() : MMCifInfo
• AddBond() : Compound , GfxView , AtomView , EntityView
• AddButton() : ButtonBox
• AddButtonBox() : ButtonBar
• AddCallback() : Progress
• AddChain() : MMCifInfoBioUnit , EntityView , Diag , SequenceViewObject
• AddChild() : SceneNode
• AddCitation() : MMCifInfo
• AddCol() : Table
• AddCommand() : PythonInterpreterWorker
• AddCompound() : CompoundLib
• AddConn() : ConnResEntry
• AddContext() : PythonContext
• AddCyl() : PrimList
• AddCylinder() : IndexedVertexArray
• AddDefault() : InfoHandle
• AddDiag() : DiagEngine
• AddDif() : MMCifInfoStructRefSeq
• AddDisplayMode() : BaseViewObject
• AddDockWidget() : MainWindow
• AddEntity() : SequenceViewer
• addError() : _XMLTestResult
• addFailure() : _XMLTestResult
• AddFrame() : CoordGroupHandle , CoordSource , InMemCoordSource
• AddFrames() : CoordGroupHandle
• AddGradientToInfo() : GradientListModel
• AddIcoSphere() : IndexedVertexArray
• AddInt() : Diag
• AddItem() : GradientListModel , PresetEditorListModel , PresetListModel
• AddLabel() : GfxObj
• AddLF() : IsosurfaceGenerator
• AddLine() : PrimList , IndexedVertexArray
• AddMesh() : PrimList
• AddMMCifPDBChainTr() : MMCifInfo
• AddNode() : Polygon2 , SceneWinModel , PolygonMask
• AddNodeEntryList() : BackboneTrace
• AddObserver() : RenderOptions
• AddOp() : Preset
• AddOperation() : MMCifInfo
• AddOperations() : MMCifInfoBioUnit
• AddOption() : ToolOptionGroup , ToolOptions
• AddOverlay() : DataViewer , OverlayManager
• AddPDBMMCifChainTr() : MMCifInfo
• AddPersistentWidget() : MainArea
• AddPoint() : PointCloud , PrimList
• AddPointCloud() : PointCloudManager
• AddPresetToInfo() : PresetListModel
• AddQuad() : IndexedVertexArray
• AddResidue() : Diag , ChainView , EntityView
• AddRevision() : MMCifInfoRevisions , MMCifInfo , MMCifInfoRevisions , MMCifInfo
• AddRow() : Table
• AddSecondaryConnector() : AtomImpl
• AddSequence() : SequenceViewObject , AlignmentHandle , SequenceListImpl , ConstSequenceList , SequenceList
• AddSink() : MultiLogSink
• AddSphere() : PrimList , IndexedVertexArray
• addState() : StateMachine
• AddStop() : GradientEdit
• AddString() : Diag
• AddText() : PrimList
• AddToken() : PythonContext
• AddTool() : ToolManager
• AddTors() : ConnResEntry
• AddTorsion() : EditorBase , EntityImpl , ResidueImpl
• addTransition() : State
• AddTri() : IndexedVertexArray , SurfaceImpl , SurfaceHandle
• AddTriN() : IndexedVertexArray
• AddVertex() : SurfaceImpl , SurfaceHandle
• AddView() : EntityRenderer , SceneWin
• AddViewMode() : PanelBar
• AddWidget() : MainArea , PanelBar , PanelManager , ComboOptionsWidget , ToolBarOptionsWidget
• AddWidgetByName() : PanelManager
• AddWidgetToApp() : GostyApp
• AddWidgetToPool() : PanelManager
• AdjustPhaseOrigin() : ImageStateImpl< T, D >
• AdminRights() : AdminRights
• AdvanceProgress() : Progress
• AlgorithmBase() : AlgorithmBase
• Align() : AlignmentContextMenu
• AlignedColumn() : AlignedColumn
• AlignedColumnIterator() : AlignedColumnIterator
• AlignedCuboid() : AlignedCuboid
• AlignedRegion() : AlignedRegion
• AlignmentChanged() : SequenceTableView , SequenceViewer
• AlignmentHandle() : AlignmentHandle
• AlignmentOpts() : AlignmentOpts
• AlignmentViewObject() : AlignmentViewObject
• AlignPropertiesPainter() : AlignPropertiesPainter
• AllCleared() : MessageWidget
• Alpha() : Color
• AminoAcidSet() : AminoAcidSet
• AminoAcidSetIterator() : AminoAcidSetIterator
• AnisotropicFilter() : AnisotropicFilter
• Append() : SequenceImpl , SequenceHandle
• AppendCode() : TextLogger
• AppendColorOp() : GfxObj
• AppendCommand() : ShellHistory
• AppendCommandlineArgument() : PythonInterpreter
• AppendError() : PythonShellWidget
• AppendModulePath() : PythonInterpreter
• AppendOutput() : PythonShellWidget , TextLogger
• AppendResidue() : EditorBase , ChainImpl
• Apply() : EntityImpl , Surface , EntityRenderer , Surface , Transformation , CircleMask , ConstData , Data , ConnectRendererBase , ExtentMask , ImageHandle , Entity , ImageHandle , ConstImageHandle , Entity , ConstImageHandle , ImageList , ImageStateBase , ResidueImpl , ImageStateBase , ImageStateImpl< T, D > , MaskBase , NullData , PolygonMask , InfoGroup , InfoHandle , AtomHandle , AtomView , BondHandle , ChainHandle , ChainView , EntityHandle , EntityView , ChainImpl , ConnectorImpl , ResidueView , InfoHandle , TorsionImpl , ResidueHandle , ResidueView , TorsionHandle , AtomImpl , ChainView , ImageStateBase , SphericalMask , InvertedMask , TraceRendererBase , ImageHandle , ImageStateBase , ImageList , Selection , Function , CompositeMask , Rotation3 , Transform , Entity , GfxNode , GfxObj , ConnectRendererBase , EntityRenderer , TraceRendererBase , Scene
• ApplyAxisRotation() : Transform
• ApplyInverse() : Transform
• ApplyIP() : ImageHandle , ImageStateImpl< T, D > , ImageList , ImageHandle , Data , ImageList , ConstData , Function , ImageHandle , ConstImageHandle , ImageList , ImageStateBase , ImageStateImpl< T, D > , NullData , ImageHandle , ImageStateBase , ImageStateImpl< T, D >
• ApplyOn() : VisibilityOp , Preset , RenderOp
• ApplyOptions() : Entity , RenderModeWidget
• ApplyRenderOptions() : LineRenderOptions , CartoonRenderOptions , CustomRenderOptions , TraceRenderOptions , RenderOptions , SlineRenderOptions , CPKRenderOptions
• ApplyShiftToMask() : MaskOverlay
• ApplyTo() : BasicGradientColorOp , ByElementColorOp , MapHandleColorOp , UniformColorOp , EntityViewColorOp , MapHandleColorOp , GradientLevelColorOp , ColorOp , ByChainColorOp
• ApplyTransform() : CoordSource , XCSEditor , EntityImpl , XCSEditor , CoordGroupHandle
• ApplyXAxisRotation() : Transform
• ApplyXAxisTranslation() : Transform
• ApplyYAxisRotation() : Transform
• ApplyYAxisTranslation() : Transform
• ApplyZAxisRotation() : Transform
• ApplyZAxisTranslation() : Transform
• AreResiduesConsecutive() : Builder
• Argand() : Argand
• As() : ImageFormatBase
• AsBool() : InfoItem
• AsFloat() : InfoItem
• AsInt() : InfoItem
• Assign() : GenericPropContainerImpl
• AssignBackBoneTorsionsToResidue() : Builder
• AssignSecondaryStructure() : ChainImpl , ChainHandle
• AssignSecStructure() : MMCifReader
• AssignTorsions() : Builder , HeuristicBuilder , RuleBasedBuilder
• AssignTorsionsToResidue() : RuleBasedBuilder , Builder , HeuristicBuilder
• AsString() : ResNum
• AsVector() : InfoItem
• At() : Plane , Ellipse2 , Line2 , Line3 , Hyperbola2
• AtAngle() : Ellipse2
• AtEnd() : ShellHistory , RowSet< R > , ExtentIterator , IndexIterator , LineIterator , IterRange< I >
• AtomBase() : AtomBase
• AtomEntry() : AtomEntry
• AtomGroupEntry() : AtomGroupEntry
• AtomHandle() : AtomHandle
• AtomHandleIter() : AtomHandleIter
• AtomImpl() : AtomImpl
• AtomProp() : AtomProp
• AtomsBegin() : EntityView , ChainHandle , EntityHandle , ResidueHandle
• AtomsEnd() : ResidueHandle , EntityView , EntityHandle , ChainHandle
• AtomSpec() : AtomSpec
• AtomView() : AtomView
• AtomViewIter() : AtomViewIter
• AtStart() : ExtentIterator , IndexIterator
• Attach() : Observable< T > , SurfaceImpl , ImageHandle , Function , ConstImageHandle , NullData , SurfaceHandle , SurfaceImpl , OverlayManager , SurfaceHandle , ConstData
• AttachGfxObject() : SequenceViewObject
• AttachObserver() : Scene , SceneObserverImpl , EntityHandle , EntityImpl
• AttachRenderModeObserver() : SceneWinModel
• AttachView() : SequenceHandle , SequenceImpl , AlignmentHandle , SequenceHandle , SequenceImpl
• AutoAutoslab() : Scene
• AutoCorrelateFnc() : AutoCorrelateFnc
• AutomaticTransition() : AutomaticTransition
• Autoslab() : Scene
• AutoslabMax() : Scene