ost::mol::impl Namespace Reference

Namespaces
namespace	tok

Data Structures
struct	AtomGroupEntry
struct	AtomGroup
class	AtomImpl
	Atom implementation. More...
class	AtomProp
class	ChainImpl
class	ConnectorImpl
class	Dihedral
	Low level dihedral implementation. More...
class	EntityImpl
class	FragmentImpl
class	pointer_it
class	WithinParam
class	StringOrRegexParam
class	Node
class	LogicOPNode
class	SelNode
class	QueryToken
class	QueryLexer
struct	SelStmt
struct	SelItem
struct	GenProp
	Struct to store info about GenericProperties parsed from the. More...
class	QueryImpl
	query statement implementation More...
class	ResidueImpl
class	SurfaceImpl
class	TorsionImpl

Typedefs
typedef std::vector < AtomGroupEntry >	AtomGroupEntryList
typedef std::map< String, AtomGroup >	AtomEntryGroups
typedef boost::shared_ptr < AtomImpl >	AtomImplPtr
typedef std::vector< AtomImplPtr >	AtomImplList
typedef boost::weak_ptr< AtomImpl >	AtomImplW
typedef std::vector< AtomImplW >	AtomImplWList
typedef boost::shared_ptr < ChainImpl >	ChainImplPtr
typedef boost::weak_ptr < ChainImpl >	ChainImplW
typedef boost::shared_ptr < ConnectorImpl >	ConnectorImplP
typedef boost::weak_ptr < ConnectorImpl >	ConnectorImplW
typedef std::list< ConnectorImplP >	ConnectorImplList
typedef std::map< AtomImpl *, AtomImplPtr >	AtomImplMap
typedef std::map< ResidueImpl *, ResidueImplPtr >	ResidueImplMap
typedef std::vector< ChainImplPtr >	ChainImplList
typedef std::map < ConnectorImpl *, ConnectorImplP >	ConnectorImplMap
typedef std::map< TorsionImpl *, TorsionImplP >	TorsionImplMap
typedef std::vector < FragmentImplP >	FragmentImplList
typedef std::map < EntityObserver *, EntityObserverPtr >	EntityObserverMap
typedef SpatialOrganizer < AtomImplPtr >	SpatialAtomOrganizer
typedef boost::shared_ptr < EntityImpl >	EntityImplPtr
typedef boost::weak_ptr < EntityImpl >	EntityImplW
typedef boost::shared_ptr < FragmentImpl >	FragmentImplP
typedef boost::variant< int, Real, WithinParam, StringOrRegexParam >	ParamType
typedef std::vector< SelItem >	SelStack
typedef std::vector< SelStmt >	SelStmts
typedef boost::shared_ptr < QueryImpl >	QueryImplP
typedef boost::shared_ptr < ResidueImpl >	ResidueImplPtr
typedef boost::weak_ptr < ResidueImpl >	ResidueImplW
typedef std::vector < ResidueImplPtr >	ResidueImplList
typedef SpatialOrganizer < SurfaceVertexID >	SpatialSurfaceVertexOrganizer
typedef boost::shared_ptr < SurfaceImpl >	SurfaceImplP
typedef boost::shared_ptr < TorsionImpl >	TorsionImplP
typedef std::vector< TorsionImplP >	TorsionImplList

Enumerations
enum	EntityDirtyFlags {   DirtyICS = 1, DirtyXCS = 2, DirtyTrace = DirtyICS+4, DirtyOrganizer = 8,   DisableICS = 16 }
enum	LogicOP { LOP_OR, LOP_AND }
enum	CompOP {   COP_EQ, COP_NEQ, COP_GE, COP_LE,   COP_LT, COP_GT }
enum	SelItemType { LOGIC, VALUE }

Functions
std::ostream &	operator<< (std::ostream &o, const AtomImplPtr ap)
bool	ConnectorExists (const AtomImplPtr &a, const AtomImplPtr &b)
ConnectorImplP	GetConnector (const AtomImplPtr &a, const AtomImplPtr &b)
template<typename T >
pointer_it< T >	begin (const std::vector< T > &values)
template<typename T >
pointer_it< T >	end (const std::vector< T > &values)

---

Typedef Documentation

typedef std::map<String, AtomGroup> AtomEntryGroups

Definition at line 48 of file atom_group.hh.

typedef std::vector<AtomGroupEntry> AtomGroupEntryList

Definition at line 41 of file atom_group.hh.

typedef std::vector<AtomImplPtr> AtomImplList

Definition at line 38 of file atom_impl_fw.hh.

typedef std::map<AtomImpl*,AtomImplPtr> AtomImplMap

Definition at line 54 of file entity_impl.hh.

typedef boost::shared_ptr<AtomImpl> AtomImplPtr

Definition at line 33 of file atom_impl_fw.hh.

typedef boost::weak_ptr<AtomImpl> AtomImplW

Definition at line 40 of file atom_impl_fw.hh.

typedef std::vector<AtomImplW> AtomImplWList

Definition at line 42 of file atom_impl_fw.hh.

typedef std::vector<ChainImplPtr> ChainImplList

Definition at line 58 of file entity_impl.hh.

typedef boost::shared_ptr<ChainImpl> ChainImplPtr

Definition at line 28 of file chain_impl_fw.hh.

typedef boost::weak_ptr<ChainImpl> ChainImplW

Definition at line 30 of file chain_impl_fw.hh.

typedef std::list<ConnectorImplP> ConnectorImplList

Definition at line 30 of file connector_impl_fw.hh.

typedef std::map<ConnectorImpl*,ConnectorImplP> ConnectorImplMap

Definition at line 60 of file entity_impl.hh.

typedef boost::shared_ptr<ConnectorImpl> ConnectorImplP

Definition at line 27 of file connector_impl_fw.hh.

typedef boost::weak_ptr<ConnectorImpl> ConnectorImplW

Definition at line 29 of file connector_impl_fw.hh.

typedef boost::shared_ptr<EntityImpl> EntityImplPtr

Definition at line 27 of file entity_impl_fw.hh.

typedef boost::weak_ptr<EntityImpl> EntityImplW

Definition at line 32 of file entity_impl_fw.hh.

typedef std::map<EntityObserver*,EntityObserverPtr> EntityObserverMap

Definition at line 66 of file entity_impl.hh.

typedef std::vector<FragmentImplP> FragmentImplList

Definition at line 64 of file entity_impl.hh.

typedef boost::shared_ptr<FragmentImpl> FragmentImplP

Definition at line 28 of file fragment_impl_fw.hh.

typedef boost::variant<int, Real, WithinParam, StringOrRegexParam> ParamType

Definition at line 71 of file query_ast.hh.

typedef boost::shared_ptr<QueryImpl> QueryImplP

Definition at line 27 of file query_impl_fw.hh.

typedef std::vector<ResidueImplPtr> ResidueImplList

Definition at line 37 of file residue_impl_fw.hh.

typedef std::map<ResidueImpl*,ResidueImplPtr> ResidueImplMap

Definition at line 56 of file entity_impl.hh.

typedef boost::shared_ptr<ResidueImpl> ResidueImplPtr

Definition at line 28 of file residue_impl_fw.hh.

typedef boost::weak_ptr<ResidueImpl> ResidueImplW

Definition at line 34 of file residue_impl_fw.hh.

typedef std::vector<SelItem> SelStack

Definition at line 157 of file query_impl.hh.

typedef std::vector<SelStmt> SelStmts

Definition at line 160 of file query_impl.hh.

typedef SpatialOrganizer<AtomImplPtr> SpatialAtomOrganizer

Definition at line 68 of file entity_impl.hh.

typedef SpatialOrganizer<SurfaceVertexID> SpatialSurfaceVertexOrganizer

Definition at line 32 of file surface_impl.hh.

typedef boost::shared_ptr<SurfaceImpl> SurfaceImplP

Definition at line 26 of file surface_impl_fw.hh.

typedef std::vector<TorsionImplP> TorsionImplList

Definition at line 33 of file torsion_impl_fw.hh.

typedef std::map<TorsionImpl*,TorsionImplP> TorsionImplMap

Definition at line 62 of file entity_impl.hh.

typedef boost::shared_ptr<TorsionImpl> TorsionImplP

Definition at line 27 of file torsion_impl_fw.hh.

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Enumeration Type Documentation

enum CompOP

Enumerator:

COP_EQ
COP_NEQ
COP_GE
COP_LE
COP_LT
COP_GT

Definition at line 34 of file query_ast_fw.hh.

enum EntityDirtyFlags

Enumerator:

DirtyICS
DirtyXCS
DirtyTrace
DirtyOrganizer
DisableICS

Definition at line 71 of file entity_impl.hh.

enum LogicOP

Enumerator:

LOP_OR
LOP_AND

Definition at line 30 of file query_ast_fw.hh.

enum SelItemType

Enumerator:

LOGIC
VALUE

Definition at line 135 of file query_impl.hh.

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Function Documentation

pointer_it<T> ost::mol::impl::begin ( const std::vector< T > &  values )

inline

Definition at line 66 of file pointer_iterator.hh.

bool ost::mol::impl::ConnectorExists	(	const AtomImplPtr &	a,
		const AtomImplPtr &	b
	)

pointer_it<T> ost::mol::impl::end ( const std::vector< T > &  values )

inline

Definition at line 72 of file pointer_iterator.hh.

ConnectorImplP ost::mol::impl::GetConnector	(	const AtomImplPtr &	a,
		const AtomImplPtr &	b
	)

std::ostream& ost::mol::impl::operator<<	(	std::ostream &	o,
		const AtomImplPtr	ap
	)