ost::mol::impl Namespace Reference

Namespaces
namespace	tok
Data Structures
struct	AtomGroupEntry
struct	AtomGroup
class	AtomImpl
	Atom implementation. More...
class	AtomProp
class	ChainImpl
class	ConnectorImpl
class	Dihedral
	Low level dihedral implementation. More...
class	EntityImpl
class	FragmentImpl
class	pointer_it
class	WithinParam
class	StringOrRegexParam
class	Node
class	LogicOPNode
class	SelNode
class	QueryToken
class	QueryLexer
struct	SelStmt
struct	SelItem
struct	GenProp
	Struct to store info about GenericProperties parsed from the. More...
class	QueryImpl
	query statement implementation More...
class	ResidueImpl
class	SurfaceImpl
class	TorsionImpl
Typedefs
typedef std::vector < AtomGroupEntry >	AtomGroupEntryList
typedef std::map< String, AtomGroup >	AtomEntryGroups
typedef boost::shared_ptr < AtomImpl >	AtomImplPtr
typedef std::vector< AtomImplPtr >	AtomImplList
typedef boost::weak_ptr< AtomImpl >	AtomImplW
typedef std::vector< AtomImplW >	AtomImplWList
typedef boost::shared_ptr < ChainImpl >	ChainImplPtr
typedef boost::weak_ptr < ChainImpl >	ChainImplW
typedef boost::shared_ptr < ConnectorImpl >	ConnectorImplP
typedef boost::weak_ptr < ConnectorImpl >	ConnectorImplW
typedef std::list< ConnectorImplP >	ConnectorImplList
typedef std::map< AtomImpl *, AtomImplPtr >	AtomImplMap
typedef std::map< ResidueImpl *, ResidueImplPtr >	ResidueImplMap
typedef std::vector< ChainImplPtr >	ChainImplList
typedef std::map < ConnectorImpl *, ConnectorImplP >	ConnectorImplMap
typedef std::map< TorsionImpl *, TorsionImplP >	TorsionImplMap
typedef std::vector < FragmentImplP >	FragmentImplList
typedef std::map < EntityObserver *, EntityObserverPtr >	EntityObserverMap
typedef SpatialOrganizer < AtomImplPtr >	SpatialAtomOrganizer
typedef boost::shared_ptr < EntityImpl >	EntityImplPtr
typedef boost::weak_ptr < EntityImpl >	EntityImplW
typedef boost::shared_ptr < FragmentImpl >	FragmentImplP
typedef boost::variant< int, Real, WithinParam, StringOrRegexParam >	ParamType
typedef std::vector< SelItem >	SelStack
typedef std::vector< SelStmt >	SelStmts
typedef boost::shared_ptr < QueryImpl >	QueryImplP
typedef boost::shared_ptr < ResidueImpl >	ResidueImplPtr
typedef boost::weak_ptr < ResidueImpl >	ResidueImplW
typedef std::vector < ResidueImplPtr >	ResidueImplList
typedef SpatialOrganizer < SurfaceVertexID >	SpatialSurfaceVertexOrganizer
typedef boost::shared_ptr < SurfaceImpl >	SurfaceImplP
typedef boost::shared_ptr < TorsionImpl >	TorsionImplP
typedef std::vector< TorsionImplP >	TorsionImplList
Enumerations
enum	EntityDirtyFlags { DirtyICS = 1, DirtyXCS = 2, DirtyTrace = DirtyICS+4, DirtyOrganizer = 8, DisableICS = 16 }
enum	LogicOP { LOP_OR, LOP_AND }
enum	CompOP { COP_EQ, COP_NEQ, COP_GE, COP_LE, COP_LT, COP_GT }
enum	SelItemType { LOGIC, VALUE }
Functions
std::ostream &	operator<< (std::ostream &o, const AtomImplPtr ap)
bool	ConnectorExists (const AtomImplPtr &a, const AtomImplPtr &b)
ConnectorImplP	GetConnector (const AtomImplPtr &a, const AtomImplPtr &b)
template<typename T >
pointer_it< T >	begin (const std::vector< T > &values)
template<typename T >
pointer_it< T >	end (const std::vector< T > &values)