#include <rule_based.hh>
Inherits ost::conop::Processor.
Public Member Functions | |
| RuleBasedProcessor (CompoundLibPtr compound_lib) | |
| RuleBasedProcessor (CompoundLibPtr compound_lib, bool fe, bool sh, ConopAction ur, ConopAction ua, bool bf, bool at, bool cn, bool aa, ConopAction zo) | |
| ConopAction | GetUnkResidueTreatment () const |
| ConopAction | GetUnkAtomTreatment () const |
| bool | GetFixElement () const |
| void | SetFixElement (bool flag) |
| bool | GetStrictHydrogens () const |
| void | SetStrictHydrogens (bool flag) |
| void | SetUnkResidueTreatment (ConopAction action) |
| void | SetUnkAtomTreatment (ConopAction action) |
| virtual ProcessorPtr | Copy () const |
| virtual String | ToString () const |
Protected Member Functions | |
| void | ProcessUnkResidue (DiagnosticsPtr diags, mol::ResidueHandle res, mol::AtomHandleList &remaining) const |
| void | ProcessUnkAtoms (DiagnosticsPtr diags, mol::ResidueHandle res, mol::AtomHandleList unks, mol::AtomHandleList &remaining) const |
| virtual void | DoProcess (DiagnosticsPtr diags, mol::EntityHandle ent) const |
Definition at line 37 of file rule_based.hh.
| RuleBasedProcessor | ( | CompoundLibPtr | compound_lib | ) | [inline] |
Definition at line 39 of file rule_based.hh.
| RuleBasedProcessor | ( | CompoundLibPtr | compound_lib, | |
| bool | fe, | |||
| bool | sh, | |||
| ConopAction | ur, | |||
| ConopAction | ua, | |||
| bool | bf, | |||
| bool | at, | |||
| bool | cn, | |||
| bool | aa, | |||
| ConopAction | zo | |||
| ) | [inline] |
Definition at line 45 of file rule_based.hh.
| virtual ProcessorPtr Copy | ( | ) | const [inline, virtual] |
Implements Processor.
Definition at line 78 of file rule_based.hh.
| virtual void DoProcess | ( | DiagnosticsPtr | diags, | |
| mol::EntityHandle | ent | |||
| ) | const [protected, virtual] |
Implements Processor.
| bool GetFixElement | ( | ) | const [inline] |
Definition at line 58 of file rule_based.hh.
| bool GetStrictHydrogens | ( | ) | const [inline] |
Definition at line 64 of file rule_based.hh.
| ConopAction GetUnkAtomTreatment | ( | ) | const [inline] |
Definition at line 54 of file rule_based.hh.
| ConopAction GetUnkResidueTreatment | ( | ) | const [inline] |
Definition at line 50 of file rule_based.hh.
| void ProcessUnkAtoms | ( | DiagnosticsPtr | diags, | |
| mol::ResidueHandle | res, | |||
| mol::AtomHandleList | unks, | |||
| mol::AtomHandleList & | remaining | |||
| ) | const [protected] |
| void ProcessUnkResidue | ( | DiagnosticsPtr | diags, | |
| mol::ResidueHandle | res, | |||
| mol::AtomHandleList & | remaining | |||
| ) | const [protected] |
| void SetFixElement | ( | bool | flag | ) | [inline] |
Definition at line 61 of file rule_based.hh.
| void SetStrictHydrogens | ( | bool | flag | ) | [inline] |
Definition at line 68 of file rule_based.hh.
| void SetUnkAtomTreatment | ( | ConopAction | action | ) | [inline] |
Definition at line 75 of file rule_based.hh.
| void SetUnkResidueTreatment | ( | ConopAction | action | ) | [inline] |
Definition at line 71 of file rule_based.hh.
1.6.1
