FastaIOHandler Class Reference

#include <fasta_io_handler.hh>

Inherits ost::io::SequenceIOHandler, and ost::io::SequenceIOHandler.

Public Member Functions
virtual void	Import (seq::SequenceList &aln, const boost::filesystem::path &loc)
virtual void	Export (const seq::ConstSequenceList &aln, const boost::filesystem::path &loc) const
virtual void	Import (seq::SequenceList &aln, std::istream &instream)
virtual void	Export (const seq::ConstSequenceList &aln, std::ostream &ostream) const
virtual void	Import (seq::SequenceList &aln, const boost::filesystem::path &loc)
virtual void	Export (const seq::ConstSequenceList &aln, const boost::filesystem::path &loc) const
virtual void	Import (seq::SequenceList &aln, std::istream &instream)
virtual void	Export (const seq::ConstSequenceList &aln, std::ostream &ostream) const
Static Public Member Functions
static bool	ProvidesImport (const boost::filesystem::path &loc, const String &format="auto")
static bool	ProvidesExport (const boost::filesystem::path &loc, const String &format="auto")
static String	GetFormatName ()
static String	GetFormatDescription ()
static bool	ProvidesImport (const boost::filesystem::path &loc, const String &format="auto")
static bool	ProvidesExport (const boost::filesystem::path &loc, const String &format="auto")
static String	GetFormatName ()
static String	GetFormatDescription ()

---

Detailed Description

Definition at line 29 of file fasta_io_handler.hh.

---

Member Function Documentation

virtual void Export	(	const seq::ConstSequenceList &	aln,
		std::ostream &	ostream
	)			const [virtual]

Implements SequenceIOHandler.

virtual void Export	(	const seq::ConstSequenceList &	aln,
		const boost::filesystem::path &	loc
	)			const [virtual]

Implements SequenceIOHandler.

virtual void Export	(	const seq::ConstSequenceList &	aln,
		std::ostream &	ostream
	)			const [virtual]

Implements SequenceIOHandler.

virtual void Export	(	const seq::ConstSequenceList &	aln,
		const boost::filesystem::path &	loc
	)			const [virtual]

Implements SequenceIOHandler.

static String GetFormatDescription

(

)

[inline, static]

Definition at line 48 of file fasta_io_handler.hh.

static String GetFormatDescription

(

)

[inline, static]

Definition at line 48 of file fasta_io_handler.hh.

static String GetFormatName

(

)

[inline, static]

Definition at line 47 of file fasta_io_handler.hh.

static String GetFormatName

(

)

[inline, static]

Definition at line 47 of file fasta_io_handler.hh.

virtual void Import	(	seq::SequenceList &	aln,
		std::istream &	instream
	)			[virtual]

Implements SequenceIOHandler.

virtual void Import	(	seq::SequenceList &	aln,
		const boost::filesystem::path &	loc
	)			[virtual]

Implements SequenceIOHandler.

virtual void Import	(	seq::SequenceList &	aln,
		std::istream &	instream
	)			[virtual]

Implements SequenceIOHandler.

virtual void Import	(	seq::SequenceList &	aln,
		const boost::filesystem::path &	loc
	)			[virtual]

Implements SequenceIOHandler.

static bool ProvidesExport	(	const boost::filesystem::path &	loc,
		const String &	format = "auto"
	)			[static]

static bool ProvidesExport	(	const boost::filesystem::path &	loc,
		const String &	format = "auto"
	)			[static]

static bool ProvidesImport	(	const boost::filesystem::path &	loc,
		const String &	format = "auto"
	)			[static]

static bool ProvidesImport	(	const boost::filesystem::path &	loc,
		const String &	format = "auto"
	)			[static]

---

The documentation for this class was generated from the following files:

• stage/include/ost/io/fasta_io_handler.hh
• stage/include/ost/io/seq/fasta_io_handler.hh