cluster Class Reference

Public Member Functions

def __init__

Data Fields

 sequences
 representative_id
 alignment

Detailed Description

Holds the information of one cluster

.. attribute:: sequences
  
  SequenceList containing all sequences of the cluster

.. attribute:: representative_id

  a string, that contains the name of the representative sequence of the cluster
  as estimated by kClust. 
  
.. attribute:: alignment

  alignment handle containing a multiple sequence alignment of all sequences of
  the cluster. Gets only calculated when binding is called with appropriate flag.

Definition at line 19 of file kclust.py.


Member Function Documentation

def __init__ (   self,
  sequences,
  representative_id 
)

Definition at line 39 of file kclust.py.


Field Documentation

Definition at line 43 of file kclust.py.

Definition at line 42 of file kclust.py.

Definition at line 41 of file kclust.py.


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