HHblitsHit Class Reference

Public Member Functions
def	__init__
Data Fields
	hit_id
	aln
	score
	ss_score
	evalue
	prob
	pvalue

Detailed Description

A hit found by HHblits

.. attribute:: hit_id

  String identifying the hit

  :type: :class:`str`

.. attribute:: aln

  Pairwise alignment containing the aligned part between the query and the
  target. First sequence is the query, the second sequence the target.

  :type: :class:`~ost.seq.AlignmentHandle`

.. attribute:: score

  The alignment score

  :type: :class:`float`

.. attribute:: ss_score

  The secondary structure score

  :type: :class:`float`

.. attribute:: evalue

  The E-value of the alignment

  :type: :class:`float`

.. attribute:: pvalue

  The P-value of the alignment

  :type: :class:`float`

.. attribute:: prob

  The probability of the alignment (between 0 and 100)

  :type: :class:`float`

Definition at line 14 of file hhblits.py.