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00019 #ifndef OST_IO_LOAD_ALIGNMENT_HH
00020 #define OST_IO_LOAD_ALIGNMENT_HH
00021
00022
00023
00024
00025
00026 #include <ost/io/module_config.hh>
00027 #include <ost/seq/sequence_list.hh>
00028 #include <ost/seq/alignment_handle.hh>
00029 #include <ost/seq/profile_handle.hh>
00030
00031 namespace ost { namespace io {
00032
00033 seq::AlignmentHandle DLLEXPORT_OST_IO
00034 LoadAlignment(const String& file_name, const String& format="auto");
00035
00036 seq::AlignmentHandle DLLEXPORT_OST_IO
00037 AlignmentFromStream(std::istream& stream, const String& format);
00038
00039 seq::AlignmentHandle DLLEXPORT_OST_IO
00040 AlignmentFromString(const String& data, const String& format);
00041
00042
00043 seq::SequenceList DLLEXPORT_OST_IO
00044 LoadSequenceList(const String& file_name, const String& format="auto");
00045
00046 seq::SequenceList DLLEXPORT_OST_IO
00047 SequenceListFromStream(std::istream& stream, const String& format);
00048
00049 seq::SequenceList DLLEXPORT_OST_IO
00050 SequenceListFromString(const String& data, const String& format);
00051
00052 seq::SequenceHandle DLLEXPORT_OST_IO
00053 LoadSequence(const String& file_name, const String& format="auto");
00054
00055 seq::SequenceHandle DLLEXPORT_OST_IO
00056 SequenceFromStream(std::istream& stream, const String& format);
00057
00058 seq::SequenceHandle DLLEXPORT_OST_IO
00059 SequenceFromString(const String& data, const String& format);
00060
00061 seq::ProfileHandlePtr DLLEXPORT_OST_IO
00062 LoadSequenceProfile(const String& file_name, const String& format="auto");
00063
00064 }}
00065
00066 #endif