Processor Class Reference
#include <processor.hh>
Inherited by HeuristicProcessor, and RuleBasedProcessor.
Public Member Functions |
DiagnosticsPtr | Process (mol::EntityHandle ent, bool log_diags=true) const |
virtual ProcessorPtr | Copy () const =0 |
virtual | ~Processor () |
| Processor (bool bf, bool at, bool cn, bool aa, ConopAction zo) |
| Processor () |
void | SetConnect (bool connect) |
bool | GetConnect () const |
void | SetAssignTorsions (bool flag) |
bool | GetAssignTorsions () const |
bool | GetConnectAminoAcids () const |
void | SetConnectAminoAcids (bool c) |
bool | GetCheckBondFeasibility () const |
void | SetCheckBondFeasibility (bool flag) |
ConopAction | GetZeroOccTreatment () const |
void | SetZeroOccTreatment (ConopAction action) |
virtual String | ToString () const =0 |
Protected Member Functions |
virtual void | DoProcess (DiagnosticsPtr diags, mol::EntityHandle ent) const =0 |
virtual bool | BeginProcessing (DiagnosticsPtr diags, mol::EntityHandle ent) const |
virtual bool | EndProcessing (DiagnosticsPtr diags, mol::EntityHandle ent) const |
bool | HasUnknownAtoms (mol::ResidueHandle residue, CompoundPtr compound, bool strict_hydrogens) const |
void | ReorderAtoms (mol::ResidueHandle residue, CompoundPtr compound, bool fix_element) const |
void | FillResidueProps (mol::ResidueHandle residue, CompoundPtr compound) const |
void | ConnectAtomsOfResidue (mol::ResidueHandle residue, CompoundPtr compound, bool strict_hydrogens) const |
void | ConnectResidues (mol::ResidueHandle residue, mol::ResidueHandle next) const |
void | DistanceBasedConnect (mol::AtomHandle atom) const |
mol::AtomHandle | LocateAtom (const mol::AtomHandleList &, int ordinal) const |
String | OptionsToString () const |
Static Protected Member Functions |
static bool | AreResiduesConsecutive (mol::ResidueHandle a, mol::ResidueHandle b) |
Detailed Description
Definition at line 45 of file processor.hh.
Constructor & Destructor Documentation
Member Function Documentation
bool GetAssignTorsions |
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const [inline] |
bool GetCheckBondFeasibility |
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const [inline] |
bool GetConnect |
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const [inline] |
bool GetConnectAminoAcids |
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const [inline] |
String OptionsToString |
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const [protected] |
void SetAssignTorsions |
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bool |
flag |
) |
[inline] |
void SetCheckBondFeasibility |
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bool |
flag |
) |
[inline] |
void SetConnect |
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bool |
connect |
) |
[inline] |
void SetConnectAminoAcids |
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bool |
c |
) |
[inline] |
void SetZeroOccTreatment |
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ConopAction |
action |
) |
[inline] |
virtual String ToString |
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const [pure virtual] |
The documentation for this class was generated from the following file: