AlignedColumn Class Reference

Provides access to a column in a aligned region or a sequence alignment. More...

#include <aligned_column.hh>

Public Member Functions
	AlignedColumn (const AlignmentHandle &aln, int index)
	AlignedColumn ()
int	GetIndex () const
char	operator[] (int row) const
int	GetResidueIndex (int row) const
int	GetRowCount () const
mol::ResidueView	GetResidue (int row) const

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Detailed Description

Provides access to a column in a aligned region or a sequence alignment.

Definition at line 31 of file aligned_column.hh.

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Constructor & Destructor Documentation

AlignedColumn	(	const AlignmentHandle &	aln,
		int	index
	)

AlignedColumn

(

)

construct empty (invalid) aligned column

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Member Function Documentation

int GetIndex

(

)

const

get index of column

See also:

AlignmentHandle::GetIndex()

mol::ResidueView GetResidue

(

int

row

)

const

get residue at row

See also:

AlignmentHandle::GetResidue()

int GetResidueIndex

(

int

row

)

const

get residue index at row

See also:

AlignmentHandle::GetResidueIndex()

int GetRowCount

(

)

const

get number of rows

See also:

AlignmentHandle::GetCount()

char operator[]

(

int

row

)

const

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The documentation for this class was generated from the following file:

• stage/include/ost/seq/aligned_column.hh