stage/include/ost/mol/alg/contact_overlap.hh File Reference

#include <boost/shared_ptr.hpp>
#include <ost/mol/entity_view.hh>
#include <ost/img/image.hh>
#include <ost/seq/alignment_handle.hh>
#include "module_config.hh"
#include "similarity_matrix.hh"

Go to the source code of this file.

Data Structures
struct	Contact
struct	LDT
class	DistanceMatrix
Namespaces
namespace	ost
namespace	ost::mol
namespace	ost::mol::alg
Typedefs
typedef std::vector< Contact >	ContactList
typedef boost::shared_ptr < DistanceMatrix >	DistanceMatrixPtr
Enumerations
enum	OverlapMode { OM_RELATIVE, OM_ABSOLUTE }
Functions
ContactList DLLEXPORT_OST_MOL_ALG	Contacts (const ost::mol::EntityView &ent, Real min_dist, Real max_dist)
void DLLEXPORT_OST_MOL_ALG	CalcContactNodeDegree (const ContactList &contacts)
Real DLLEXPORT_OST_MOL_ALG	ContactOverlap (const DistanceMatrixPtr &lhs, const DistanceMatrixPtr &rhs, Real tolerance, OverlapMode mode=OM_RELATIVE, Real dist_limit=1e6)
Real DLLEXPORT_OST_MOL_ALG	LocalDistanceTest (const ost::mol::EntityView &mdl, const ost::mol::EntityView &ref, Real max_dist, Real tolerance=0.02, bool only_complete=false)
SimilarityMatrix DLLEXPORT_OST_MOL_ALG	ContactOverlapMap (const ost::seq::AlignmentHandle &target_tpl_aln, Real tolerance, int idx_a, int idx_b)
SimilarityMatrix DLLEXPORT_OST_MOL_ALG	ContactOverlapMap (const ost::seq::AlignmentHandle &target_tpl_aln, Real tolerance, OverlapMode mode=OM_RELATIVE, Real max_dist=1e6)
SimilarityMatrix DLLEXPORT_OST_MOL_ALG	ContactOverlapMap (const DistanceMatrix &dmat1, const DistanceMatrix &dmat2, Real tolerance, OverlapMode mode=OM_RELATIVE, Real max_dist=1e6)
void DLLEXPORT_OST_MOL_ALG	DomainsFromCOM (const SimilarityMatrix &sim, ost::seq::AlignmentHandle aln, Real tolerance, int idx_a=-1, int idx_b=-1)