| _CachedRMSD | |
| _fake_std_streams | |
| _TestInfo | |
| _XMLTestResult | |
| AdditionalSettingsWidget | |
| AdjacencyBitmap | |
| AdminRights | |
| AlgorithmBase | Algorithm base class |
| AlignedColumn | Provides access to a column in a aligned region or a sequence alignment |
| AlignedColumnIterator | |
| AlignedCuboid | Axis-aligned cuboid |
| AlignedPatch | |
| AlignedRegion | Region in a sequence alignment |
| AlignmentContextMenu | |
| AlignmentHandle | Representation of a multiple sequence alignemnt consisting of two or more sequences |
| AlignmentOpts | Options for local and global sequence alignment algorithms |
| AlignmentViewObject | |
| AlignPropertiesPainter | |
| AminoAcidSet | Amino acid bit set |
| AminoAcidSetIterator | |
| AndOp | |
| AnisotropicFilter | |
| Argand | |
| AtomBase | Base class for AtomHandle and AtomView |
| AtomEntry | |
| AtomGroup | |
| AtomGroupEntry | |
| AtomHandle | Handle to atom datatype |
| AtomImpl | Atom implementation |
| AtomProp | |
| AtomSpec | |
| AtomView | Definition of AtomView |
| AutoCorrelateFnc | |
| AutomaticTransition | |
| BackboneTrace | |
| BackgroundPainter | |
| BaseRow | |
| BaseViewObject | |
| BasicGradientColorOp | |
| Beacon | |
| binary_dispatch_ip< FNC > | In-place binary dispatch |
| binary_dispatch_op< FNC > | Out-of-place binary dispatch |
| BinaryColExpr | |
| BinaryDataSink | |
| BinaryDataSource | |
| BinaryIStream< CONVERSIONTYPE > | |
| BinaryOStream< CONVERSIONTYPE > | |
| Bitmap | |
| BlastError | |
| BlastHit | |
| BlockModifier | |
| BlockStatusGuard | |
| BondEntry | |
| BondHandle | Chemical bond |
| BondLengthInfo | |
| BondSpec | |
| BondTable< ATOM > | |
| BondTableEntry< ATOM > | |
| BottomBar | Bottom Bar |
| Builder | |
| BuildingBlock | |
| ButterworthHighPassFilter | Butterworth High Pass Filter |
| ButterworthLowPassFilter | Butterworth Low Pass Filter |
| ButtonBar | Button box |
| ButtonBox | Button box |
| ByChainColorOp | |
| ByChainColorOpWidget | |
| ByChainGetCol | |
| ByChainWidget | |
| ByElementColorOp | |
| ByElementColorOpWidget | |
| ByElementGetCol | |
| ByElementWidget | |
| ByEntityWidget | |
| CADResult | |
| CalcDensityForceKernel | |
| CalculateSurfaceSettingsDialog | |
| Cartesian | |
| CartoonRenderer | Display entity in cartoon mode |
| CartoonRenderOptions | |
| CCP4 | |
| ChainBase | Base class for ChainHandle and ChainView |
| ChainComboBox | |
| ChainHandle | Linear chain of residues |
| ChainImpl | |
| ChainView | Definition of ChainView |
| CHARMMData | |
| Checker | |
| ChemClass | |
| ChemdictParser | |
| ChemType | |
| Circle2 | |
| CircleDrawingStrategy | |
| CircleMask | |
| circular_iter< T > | |
| ClashEvent | |
| ClashingDistances | List of reference atom-atom distances to detect clashes between non-bonded atoms |
| ClashingInfo | |
| ClipWidget | |
| ClustalIOHandler | |
| cluster | |
| ColladaExporter | |
| Color | |
| ColorOp | |
| ColorOptionsWidget | |
| ColorSelectWidget | |
| ComboOptionsWidget | |
| complexint16 | |
| complexint32 | |
| complexint8 | |
| CompositeMask | |
| Compound | Knows about the atoms and bonds of a chemical compounds |
| CompoundLib | |
| CompoundLibBase | |
| ConjFnc | |
| ConnectorImpl | |
| ConnectRendererBase | |
| Conopology | |
| ConservationPainter | |
| const_circular_iter< T > | |
| ConstData | Abstract base class for read-only data |
| ConstGenericPropContainer< H > | |
| ConstImageHandle | Read-only ImageHandle implementation |
| ConstModIPAlgorithm | In-place modification const algorithm |
| ConstModOPAlgorithm | Out-of-place modification const algorithm |
| ConstSequenceHandle | Immutable sequence |
| ConstSequenceList | List of immutable sequences |
| Contact | |
| ContactPredictionScoreResult | |
| ContactWeightMatrix | Matrix to weight pairs of amino-acids |
| ContextMenu | |
| Convert< CONVERSIONTYPE, VALUETYPE > | |
| CoordFrame | |
| CoordGroupHandle | Coordinate group, for trajectories and such |
| CoordSource | Coordinate source |
| CosFnc | |
| CPKRenderer | |
| CPKRenderOptions | |
| CPKWidget | |
| CRDReader | CHARMM coordinate file import |
| CRDWriter | CHARMM coordinate file export |
| CrossCorrelate | |
| CrosshairBaseDrawingStrategy | |
| CrosshairCircleDrawingStrategy | |
| CrosshairSquareDrawingStrategy | |
| Cuboid | Rendered cuboid in 3D space |
| Cuboid | Arbitrary oriented bounding cuboid |
| CuboidAxis | Cuboid axis defined by a normalized direction vector and a half extent |
| CurrentSelectionNode | |
| CustomPartNode | |
| CustomRenderer | |
| CustomRenderOptions | |
| CustomWidget | |
| CylinderPrim | |
| DAT | |
| Data | Abstract base class for data |
| Database | SQLite database handle |
| DatabaseError | |
| DataObserver | Abstract base class of data observer |
| DataViewer | Data viewer |
| DataViewerPanel | |
| DataViewerPanelBase | |
| Date | |
| DebugRenderer | |
| DensityForce | |
| DensityForceImpl | |
| DF3 | |
| DF3MapIOHandler | |
| DFT | |
| Diag | |
| DiagError | |
| Diagnostics | |
| Dihedral | Low level dihedral implementation |
| DiscreteShrinkFnc | Shrink image by integral amount |
| DispatchException | |
| Dist2Mean | Container for distances to mean for N structures. Main functionality: Get/Set, ExportXXX |
| DistanceMap | |
| DistanceMatrix | |
| Distances | Container for a pair wise distance for each structure. Each structure is identified by its index in the originally used alignment |
| divide_dimensions< D1, D2 > | |
| DivideByZeroException | |
| DM3 | |
| DockWidget | |
| DocWidget | |
| Domain | |
| Domains | |
| DragTabBar | Tabbed drag widget |
| DrawOverlay | |
| DropBox | |
| DSSPAccessibilityParam | |
| DX | |
| EdgeDesc | |
| EditorBase | Base class for entity editors |
| EditPositionGuard | |
| EleImpl | |
| Ellipse2 | |
| EllipticPolar | |
| EmptyMode | |
| Entity | Graphical rendering of mol::EntityHandle entites |
| EntityBase | Definition of EntityBase |
| EntityHandle | Protein or molecule |
| EntityImpl | |
| EntityIOCRDHandler | |
| EntityIOHandler | Pure abstract base class for entity io handlers |
| EntityIOHandlerFactory< HANDLER > | |
| EntityIOHandlerFactoryBase | Pure abstract base class for creation of a specfic entity io handle |
| EntityIOMAEHandler | |
| EntityIOMMCIFHandler | |
| EntityIOPDBHandler | |
| EntityIOPQRHandler | |
| EntityIOSDFHandler | |
| EntityNode | |
| EntityObserver | |
| EntityPartNode | |
| EntityPropertyMapper | |
| EntityRenderer | |
| EntityView | Definition of EntityView |
| EntityViewColorOp | |
| EntityViewGetCol | |
| EntityViewVisitor | EntityViewVisitor interface |
| EntityVisitor | EntityVisitor interface |
| Entry | |
| EnumOptBinder | |
| Error | |
| EventButton | Button box |
| ExpFnc | |
| ExplicitConvoluteFnc | |
| ExplicitCorrelateFnc | |
| Exporter | |
| ExportSceneDialog | |
| Extent | Defines lower and upper valid indices |
| ExtentIterator | Extent iterator |
| ExtentMask | |
| FastaIOHandler | |
| FastSphereRenderer | |
| FermiHighPassFilter | Fermi High Pass Filter |
| FermiLowPassFilter | Fermi Low Pass Filter |
| FFReader | |
| FFTException | |
| FFTFnc | |
| FFTPanel | |
| FileBrowser | Simplistic file browser |
| FileLoader | |
| FileLogSink | |
| FileMenu | |
| FileNotFound | |
| FileTypeDialog | Dialog to select a file type |
| FileViewer | Simplistic file viewer |
| FixedString< LENGTH > | String class that uses an array of static size to hold the characters |
| FloatOptBinder | |
| fnc_add_ip< T1, D1, T2, D2 > | |
| fnc_div_ip< T1, D1, T2, D2 > | |
| fnc_mul_ip< T1, D1, T2, D2 > | |
| fnc_paste_ip< T1, D1, T2, D2 > | |
| fnc_sub_ip< T1, D1, T2, D2 > | |
| Forcefield | |
| FormattedLine | |
| FractionalShift | |
| FragmentImpl | |
| FrequencyDomain | |
| GaussianFilterBase | Gaussian Filter |
| GaussianGradientMagnitudeFilterBase | First Derivative Gaussian Filter |
| GaussianHighPassFilter | Gaussian High Pass Filter |
| GaussianLaplacianFilterBase | Gaussian Filter |
| GaussianLowPassFilter | Gaussian Low Pass Filter |
| GDTResult | |
| GenericPropContainer< H > | Base class for the handler classes |
| GenericPropContainerImpl | Base class for the implementation |
| GenericPropError | |
| GenProp | Struct to store info about GenericProperties parsed from the |
| GeomException | |
| GfxNode | |
| GfxNodeListAttrProxy | |
| GfxNodeListProxy | |
| GfxNodeVisitor | |
| GfxObj | Main class for all graphic objects |
| GfxObjBase | Main interface for all graphic objects, both in C++ and Python |
| GfxSceneNode | |
| GfxTestObj | |
| GfxView | |
| GLCanvas | |
| GLWin | |
| GLWinBase | |
| GostExporter | |
| GostyApp | |
| GostyMainWindow | |
| Gradient | Color gradient |
| GradientColorOp | |
| GradientEdit | |
| GradientEditor | |
| GradientInfoHandler | |
| GradientLevelColorOp | |
| GradientLevelColorOpWidget | |
| GradientLevelGetCol | |
| GradientListModel | |
| GradientManager | |
| GradientPresetWidget | |
| GradientPreview | |
| GromacsBlockModifier | |
| GromacsData | |
| GromacsHydrogenConstructor | |
| GromacsPositionRuleEvaluator | |
| Gutter | |
| GutterBlock | |
| HalfFrequencyDomain | |
| HBond | |
| HBond | |
| HBondableAtoms | |
| HBondAcceptor | |
| HBondDonor | |
| Help | |
| HelpMenu | |
| HeuristicBlockModifier | |
| HeuristicHydrogenConstructor | |
| HeuristicProcessor | |
| HHblits | |
| HHblitsHeader | |
| HHblitsHit | |
| HhmIOHandler | |
| HighestPeakSearch3DBase | |
| HighPassFilter | High Pass Filter |
| HistogramBase | |
| HistogramError | |
| HistoryGuard | |
| HSCWidget | |
| HydrogenConstructor | |
| Hyperbola2 | |
| iAlignResult | |
| ICSEditor | Editor for internal molecule coordinates |
| ImageFormatBase | |
| ImageHandle | Manage shared instances of images |
| ImageList | Manages a collection of images |
| ImageStateBase | |
| ImageStateConstModIPAlgorithm< FNC > | In-place modifying image state const visitor plus ip algorithm |
| ImageStateConstModIPVisitor< FNC > | In-place modifying image state visitor |
| ImageStateConstModIPVisitorBase | In-place modifying image state const visitor base class |
| ImageStateConstModOPAlgorithm< FNC > | Out-of-place modifying image state const visitor plus op algorithm |
| ImageStateConstModOPVisitor< FNC > | Out-of-place modifying image state visitor |
| ImageStateConstModOPVisitorBase | Out-of-place modifying image state const visitor base class |
| ImageStateImpl< T, D > | |
| ImageStateModIPAlgorithm< FNC > | In-place modifying image state visitor plus ip algorithm |
| ImageStateModIPVisitor< FNC > | In-place modifying image state visitor |
| ImageStateModIPVisitorBase | In-place modifying image state visitor base class |
| ImageStateModOPAlgorithm< FNC > | Out-of-place modifying image state visitor plus op algorithm |
| ImageStateModOPVisitor< FNC > | Out-of-place modifying image state visitor |
| ImageStateModOPVisitorBase | Out-of-place modifying image state visitor base class |
| ImageStateMorphAlgorithm< FNC > | Morph visitor plus ip algorithm |
| ImageStateMorphVisitor< FNC > | Morphing image state visitor |
| ImageStateMorphVisitorBase | Morphing image state visitor base class |
| ImageStateNonModAlgorithm< FNC > | Non-modifying image state visitor plus non-mod algorithm |
| ImageStateNonModVisitor< FNC > | Non-modifying image state visitor |
| ImageStateNonModVisitorBase | Non-modifying image state visitor base class |
| ImmutableGradientInfoHandler | |
| ImmutablePresetInfoHandler | |
| Index | |
| Index< 1 > | |
| Index< 2 > | |
| Index< 3 > | |
| Index< 4 > | |
| Index< 5 > | |
| Index< 6 > | |
| Index< 7 > | |
| IndexBase< D > | |
| IndexedVertexArray | |
| IndexIterator< D > | |
| IndexIterator | |
| InfoConstVisitor | |
| InfoError | |
| InfoGroup | |
| InfoHandle | Main info handle |
| InfoImpl | |
| InfoItem | |
| InfoPanel | |
| InfoPanelLabel | |
| InfoPath | Encapsulates path to info groups and items |
| InfoSet | |
| InfoVisitor | |
| InitMenuBar | |
| InMemCoordSource | In-memory coordinate source |
| InputEvent | |
| InsDel | Get insertions and deletions of an alignment |
| InspectorDialog | |
| InspectorWidget | |
| IntegrityError | |
| Interaction | |
| IntOptBinder | |
| InvalidAlignment | |
| InvalidatedPointer | |
| InvalidExtentException | |
| InvalidHandle | Signals access of member functions of invalid handles |
| InvalidImageHandle | Exception thrown upon invalid image handle usage |
| InvalidImageStateVisitor | ImageStateVisitor general exception |
| InvalidObserver | |
| InvalidSampling | |
| InvalidSequence | |
| InvertedMask | |
| IOException | |
| IOFileAlreadyLoadedException | |
| IOManager | Central registry for input/output handlers |
| IOProfile | |
| IOProfileRegistry | |
| IOProfiles | |
| IOUnknownFormatException | |
| IPL | |
| IsosurfaceGenerator | |
| IsosurfaceGeneratorS | |
| JPK | |
| KeyEventTransition | |
| LabelNode | |
| LDT | |
| LevelPreview | |
| Line2 | Line2 |
| Line3 | Line3 |
| LinearNormalizer | Linear normalization |
| LinearRangeNormalizer | |
| LineAverageBase | Computes mean value of columns or lines |
| LineIterator | Line iterator generator |
| LineRenderOptions | |
| LineSlice | |
| LineTraceRenderer | Render backbone trace of entity |
| LineTraceRenderOptions | |
| LineTraceWidget | |
| LocalSigmaThresholdBase | |
| Log10Fnc | |
| LogFnc | |
| Logger | |
| LogicOPNode | |
| LogNormalizer | Log normalization |
| LogRangeNormalizer | |
| LogReader | |
| LogSink | |
| LowPassFilter | Low Pass Filter |
| LPadded | |
| LPaddedFloat | |
| LPaddedInt | |
| MAEReader | |
| MainArea | Main window area It is implemented as a MDI (multi document interface). This allows you to add custom widgets to it |
| MainThreadRunner | |
| MainWindow | |
| Manipulator | Rigid body manipulator |
| ManyOf | |
| MapHandleColorOp | |
| MapHandleGetCol | |
| MapIODatHandler | |
| MapIODm3Handler | |
| MapIODxHandler | |
| MapIOHandler | |
| MapIOHandlerFactory< HANDLER > | |
| MapIOHandlerFactoryBase | |
| MapIOIPLHandler | |
| MapIOJpkHandler | |
| MapIOMrcHandler | |
| MapIONanoscopeHandler | |
| MapIOPngHandler | |
| MapIOSitusHandler | |
| MapIOSpiHandler | |
| MapIOTiffHandler | |
| MapIso | Isocontour rendering for 3D image data |
| MapLevelWidget | |
| MapOctree | Octree datastructure for 3D images |
| MapSlab | Render slice of 3d image |
| MapTool | |
| MaskBase | |
| MaskImageBase | |
| MaskOverlay | |
| MaskVisitor | |
| Mat2 | |
| Mat3 | |
| Mat4 | |
| Material | |
| MeanSquareMinimizer | |
| Measurement | |
| MeasureTool | |
| MessageBoxWidget | |
| MessageLevel | |
| MessageWidget | |
| MinimalCompoundLib | |
| MirrorFnc | |
| MMAlignResult | |
| MMCifInfo | Container class for additional information from MMCif files |
| MMCifInfoBioUnit | |
| MMCifInfoCitation | |
| MMCifInfoObsolete | Container class for information on obsolete entries |
| MMCifInfoRevisions | Container class for information on file revisions |
| MMCifInfoStructDetails | |
| MMCifInfoStructRef | |
| MMCifInfoStructRefSeq | |
| MMCifInfoStructRefSeqDif | |
| MMCifInfoTransOp | |
| MMCifReader | Reader for the mmcif file format |
| MMPreprocessor | |
| Modeller | |
| ModelRepository | |
| ModIPAlgorithm | In-place modification algorithm |
| ModOPAlgorithm | Out-of-place modification algorithm |
| MouseEvent | |
| MouseEventTransition | |
| MRC | |
| MsmsProcessError | |
| MultiLogSink | |
| multiply_dimensions< D1, D2 > | |
| MyGradientStop | |
| NACCESSAccessibilityParam | |
| Nanoscope | |
| Node | |
| NodeEntry | |
| NonModAlgorithm | Non-modifying Algorithm, abstract base class |
| NoOpNormalizer | |
| NormalizeFnc | Abstract normalizer base class |
| Normalizer | |
| NormalizerImpl | |
| NormalizerTriEntry | |
| NormalizerVertexEntry | |
| NotConnectedError | Error to indicate that two atoms that are supposed to be connected are not |
| NullData | Null data singleton |
| NullOverlay | |
| NullStream | |
| Observable | Templated observable class |
| Observer | |
| OcRangeVector | |
| OctreeIsocont | Isocontouring of maps using an octree-optimization |
| OctreeNode | |
| OffscreenBuffer | |
| OffscreenBufferFormat | |
| OneOf | |
| OpBase | |
| OrOp | |
| OstCompleterBase | |
| OstDirModel | |
| OstOptionParser | |
| OstOptionParser | |
| OutOfRangeException | |
| OutputRedirector | |
| OverlapResult | |
| Overlay | |
| OverlayCustomActCheckBox | |
| OverlayCustomLockCheckBox | |
| OverlayCustomVisCheckBox | |
| OverlayManager | |
| OverlayManagerGUI | |
| OverlayManagerObserver | Abstract observer base class for the OverlayManager |
| Painter | |
| PairSubstWeightMatrix | Position-independet pair substitution weight matrix |
| PairToTupleConverter< T1, T2 > | Helper to convert between python tuple and std::pair |
| PanelBar | Panel Bar which may contain other Widgets A PanelBar might have different ViewModes which are PanelWidgetContainer classes. Per default a PanelWidgetContainer has no ViewMode therefore first of all a view mode must be added. Otherwise nothing will be displayed. The ViewMode is responsible for how the widget is displayed. This class keeps only track about the order of the added widgets and the ViewModes |
| PanelBarWidgetHolder | |
| PanelManager | Class which organizes all widgets which are in the side panels This class handles all side bar widgets. It can be used to display, hide or move a widget to a PaneBar. There are three Bars (left, bottom, right) which are organized by this class. Whenever a widget is being removed or added it checks first if the widget type is known and if there are available instances |
| PanelWidgetContainer | A PanelWidgetContainer can display various widgets A PanelWidgetContainer is a abstract class which is used by the PanelBar class as view mode |
| ParentDataObserver | |
| PasteFnc | |
| PathCompleter | |
| PDBize | |
| PDBReader | |
| PDBWriter | |
| Peak | |
| Perspective | |
| Phase | Manages phases og Complex numbers |
| PirIOHandler | |
| Pixel | Single pixel spec |
| PixelSampling | Helper class to handle pixel sampling |
| Plane | |
| PNG | |
| PodVector< T > | Vector container that treats its data as POD - even if it isn't in the strict sense |
| Point | Class encapsulating 1D to 3D point |
| PointCloud | |
| PointCloudManager | |
| pointer_it< T > | |
| PointList | List of points |
| PointlistOverlay | |
| PointlistOverlayBase | |
| PointlistOverlayBaseSettings | |
| Polar | |
| Polygon2 | |
| PolygonMask | |
| PooledWidget | |
| PovState | |
| PowerSpectrumFnc | |
| PowFnc | |
| PQRReader | CHARMM coordinate file import |
| PQRWriter | CHARMM coordinate file export |
| PrebuildSphereEntry | |
| PreparedStatement | |
| Preset | |
| PresetEditor | |
| PresetEditorListModel | |
| PresetInfoHandler | |
| PresetListModel | |
| PresetWidget | |
| Primitive | Base class for geometric primitives such as cuboids, and circles |
| PrimList | |
| Processor | |
| Profile | |
| ProfileColumn | Defines profile of 20 frequencies for one residue |
| ProfileDB | Contains a DB of profiles (identified by a unique name (String)) |
| ProfileHandle | Provides a profile for a sequence |
| ProfileIOHandler | Pure abstract base class for profile io handlers |
| ProfileIOHandlerFactory< HANDLER > | |
| ProfileIOHandlerFactoryBase | Pure abstract base class for creation of a specfic io handler |
| Progress | |
| PromodIOHandler | |
| Prop | |
| PropertyError | |
| PssmIOHandler | |
| PtrObserver< T > | |
| PyGfxObj | |
| PythonCompleter | |
| PythonContext | |
| PythonContextParser | |
| PythonInterpreter | |
| PythonInterpreterWorker | |
| PythonShell | Interactive python shell |
| PythonShellTextDocumentLayout | |
| PythonShellWidget | |
| PythonSyntaxHighlighter | |
| PythonToken | |
| PythonTokenizer | |
| QMainWindow | |
| QSscoreEntity | |
| QSscoreError | |
| QSscorer | |
| Quad | Simple rendered quad in 3D space |
| quantity< Dimensions > | |
| Quat | Unit quaternion |
| Query | Selection Query |
| QueryDialog | |
| QueryEditorWidget | |
| QueryError | |
| QueryErrorDesc | |
| QueryFlag | Query flags |
| QueryImpl | Query statement implementation |
| QueryLexer | |
| QueryState | Holds state used during query evaluation |
| QueryToken | |
| QueryViewWrapper | |
| RandomizeFnc | |
| Range | |
| Range | |
| RangeHandler | |
| RasterImage | Generic raster image |
| Rectangle2 | |
| ReferenceCalcDensityForceKernel | |
| ReferenceDensityKernelFactory | |
| RefMode | |
| RemoteLoader | |
| RemoteRepository | |
| RenderModeNode | |
| RenderModesNode | |
| RenderModeWidget | |
| RenderOp | |
| RenderOptions | |
| RenderOptionsWidget | |
| RenderOpWidget | |
| ResidueBase | Base class for ResidueHandle and ResidueView |
| ResidueHandle | Residue handle |
| ResidueImpl | |
| ResidueNames | |
| ResidueView | Residue view |
| ResNum | |
| RGBAColor | |
| RingFinder | Class for finding rings in an entity |
| RootNode | |
| Rotate2D | Rotate in XY plane |
| Rotate2D90 | Rotate 90 degree CW in XY plane |
| Rotation3 | |
| RowSet< R > | Row set iterator |
| RPadded | |
| RuleBasedProcessor | |
| Scalar | |
| Scale | Apply scale |
| Scene | Main class for organization and root for the graphical display |
| SceneFX | |
| SceneMenu | |
| SceneMenu | |
| SceneNode | |
| SceneObserver | Interface for observing graphical objects |
| SceneObserverImpl | |
| SceneSelection | |
| SceneWin | |
| SceneWinModel | Data model for scene win |
| SDFReader | |
| SDFWriter | |
| SecStrRow | |
| SecStructure | Secondary structure types as defined by DSSP. For convenience, the enum values match the characters used in the DSP file format |
| SecStructureSegment | Consecutive secondary structure element |
| Selection | |
| SelectionTool | |
| SelectMenuPoints | |
| SelectRefDialog | |
| SelHelper | |
| SelItem | |
| SelNode | |
| SelStmt | |
| SeqSearchBar | Search bar to search in multiple sequence alignment |
| SeqSecStrPainter | |
| SeqSelectionPainter | |
| SeqTextPainter | |
| SequenceDelegate | |
| SequenceHandle | Mutable sequence handle |
| SequenceImpl | |
| SequenceIOHandler | Pure abstract base class for entity io handlers |
| SequenceIOHandlerFactory< HANDLER > | |
| SequenceIOHandlerFactoryBase | Pure abstract base class for creation of a specfic alignment io handler |
| SequenceList | List of sequences |
| SequenceListImpl | |
| SequenceListIterator< T, I > | |
| SequenceModel | |
| SequenceRow | |
| SequenceTableView | QTableView with first column not moving |
| SequenceViewer | QTableView with first column not moving |
| SequenceViewObject | |
| SerializeHelper< false, T > | |
| SerializeHelper< true, T > | |
| SerializeWriteHelper< false, T > | |
| SerializeWriteHelper< true, T > | |
| Settings | |
| Shader | |
| ShellHistory | |
| ShiftFnc | |
| ShowResultDialog | |
| SideBar | Bottom Bar |
| SignalTransition | |
| SimilarityMatrix | |
| SimpleRenderer | Simple line-based rendererer at full connectivity detail |
| SimpleRenderOptions | |
| SimpleWidget | |
| Simulation | |
| SinFnc | |
| Situs | |
| Size | Class encapsulating 1D to 3D size |
| SliceFnc | |
| SlineRenderer | |
| SlineRenderOptions | |
| SlineWidget | |
| SmoothMaskImageBase | |
| SpacenavControl | |
| SpatialDomain | |
| SpatialOrganizer< ITEM, VEC > | Spatial organizer |
| Sphere | |
| SpherePrim | |
| SphericalMask | |
| Spider | |
| SplashDialog | |
| Spline | |
| SplineEntry | |
| SplitterPanelBar | Bottom Bar |
| SqrtFnc | |
| SquareDrawingStrategy | |
| StarDataItem | |
| StarLoopDesc | |
| StarParser | Parser for the STAR file format |
| StatAccumulator< MAX_MOMENT, DATATYPE > | |
| StatBase | |
| State | |
| StateExtractor | |
| StateMachine | |
| StatMinMaxBase | |
| Steep | |
| StereoChemicalAngleViolation | |
| StereoChemicalBondViolation | |
| StereoChemicalParams | List of stereo chemical parameters (Bonds and angles) |
| StereoChemistryInfo | |
| Stop | |
| StreamLogSink | |
| StringLogSink | |
| StringOrRegexParam | |
| StringRef | Convenient datatype for referencing character data |
| SubstWeightMatrix | Position-independet substitution weight matrix |
| SuperpositionDialog | |
| SuperpositionResult | Stores the number of cycles and the two final EntityViews (in case IterativeSuperposition was applied), the root mean square deviation of the two superposed objects and the transformation matrix (geom::Mat4) to superpose input1 onto input2 |
| Surface | |
| SurfaceContextMenu | |
| SurfaceHandle | |
| SurfaceImpl | |
| SurfaceIOHandler | |
| SurfaceIOHandlerFactory< HANDLER > | |
| SurfaceIOHandlerFactoryBase | |
| SurfaceIOMSMSHandler | |
| SurfaceTri | |
| SurfaceVertex | |
| SymbolDrawingStrategy | |
| SymmetryNode | Renders all child nodes and the symmetry related copies |
| SymmetryOp | |
| SystemCreator | |
| TabbedDragWidget | Tabbed drag widget |
| TabbedPanelBar | Tabbed bar |
| Table | |
| Table | |
| TableCol | |
| TableModel | |
| TableRow | |
| TableSelector | |
| TanFnc | |
| TempDirWithFiles | |
| TerminalUsageDialog | |
| TerminiConstructor | |
| TerminiExceptions | |
| TextLogger | |
| TextPrim | |
| Texture | |
| ThinSplitter | Splitter with 1 pixel wide handles |
| TickPainter | |
| TIF | |
| tiff_warning_handler_wrapper | |
| TitleRow | |
| TMAlignResult | |
| TMScoreResult | |
| Tool | Base class for tools |
| ToolBar | |
| ToolBarOptionsWidget | |
| ToolManager | |
| ToolOption | |
| ToolOptionButton | |
| ToolOptionEnum | |
| ToolOptionGroup | |
| ToolOptionNum< T, C > | |
| ToolOptions | Tool options |
| ToolOptionsWidget | |
| ToolOptionsWin | |
| Topology | |
| TopologyCreator | |
| TorsionHandle | Named torsion (dihedral) angle |
| TorsionImpl | |
| TraceProfileEntry | |
| TraceRenderer | Render backbone trace of entity |
| TraceRendererBase | |
| TraceRenderOptions | |
| TraceWidget | |
| TrajObserver | |
| TrajWidget | |
| TrajWriter | |
| Transform | Basic and essential transformation class, including translation, rotation and center of rotation |
| Transformation | Transformation base class |
| TransformFnc | |
| TransitionBase | |
| TransitionGuard | |
| Translate | Apply translation |
| TransmissionToODNormalizer | |
| TriMatrix< T > | Triangular matrix template |
| TubeWidget | |
| Tuple | |
| TwoOf | |
| types | Structure |
| types | Structure |
| unary_dispatch_ip< FNC > | In-place unary dispatch |
| unary_dispatch_op< FNC > | Out-of-place unary dispatch |
| UndefinedImageFormat | |
| UniformColorOp | |
| UniformColorOpWidget | |
| UniformColorWidget | |
| UniformGetCol | |
| UniqueAtomIdentifier | Contains the infomation needed to uniquely identify an atom in a structure |
| Units | |
| ValueHolder< V > | |
| VarianceMap | Container for variances for each entry in a distance map. Main functionality: Get/Set, Min, Max, ExportXXX Get/Set and GetSize taken from TriMatrix |
| VData | |
| Vec2 | |
| Vec3 | Three dimensional vector class, using Real precision |
| Vec3List | |
| Vec4 | |
| VectorAdditions< Container > | |
| VectorToListConverter< T > | Helper to convert between python list tuple and std::vecot |
| VerboseInfoVisitor | |
| ViewAddFlag | Flags to control the behaviour when adding handles to views |
| ViewerNormalizer | |
| Viewport | |
| VisibilityOp | |
| VisibilityOpWidget | |
| Widget | Base class for widgets |
| WidgetFactory | |
| WidgetGeomHandler | |
| WidgetPool | This Widget pool manages instances of widgets Widgets can be added to this pool by simply passing the classname and the amount of available instances. This class is coupled to the WidgetRegistry |
| WidgetRegistry | Central registry for widgets |
| WidgetState | |
| WidgetStateSaver< BASE, T1, T2, T3 > | |
| WidgetStateSaver< BASE > | |
| WidgetStateSaver< BASE, T1 > | |
| WidgetStateSaver< BASE, T1, T2 > | |
| WidgetStateSaverConfig | |
| WindowMenu | |
| WireframeWidget | |
| WithinParam | |
| XCSEditor | External coordinate system editor |
| XMLTestRunner | |
| XMLTestRunnerTest | |
| XorOp | |
1.6.1
