stage/include/ost/mol/coord_frame.hh File Reference

#include <ost/mol/module_config.hh>
#include <boost/shared_ptr.hpp>
#include <ost/geom/geom.hh>
#include <ost/mol/entity_view.hh>
#include "atom_handle.hh"

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Data Structures
class	CoordFrame
Namespaces
namespace	ost
namespace	ost::mol
Typedefs
typedef boost::shared_ptr < CoordFrame >	CoordFramePtr
typedef std::vector < CoordFramePtr >	CoordFrameList
Functions
DLLEXPORT_OST_MOL CoordFrame	CreateCoordFrame (const geom::Vec3List &atom_pos, const geom::Vec3 &cell_size=geom::Vec3(), const geom::Vec3 &cell_angles=geom::Vec3())
DLLEXPORT_OST_MOL void	GetIndices (const EntityView &sele, std::vector< unsigned long > &indices)
DLLEXPORT_OST_MOL void	GetMasses (const EntityView &sele, std::vector< Real > &masses)
DLLEXPORT_OST_MOL void	GetIndicesAndMasses (const EntityView &sele, std::vector< unsigned long > &indices, std::vector< Real > &masses)
DLLEXPORT_OST_MOL void	GetPositions (const EntityView &sele, std::vector< geom::Vec3 > &ref_pos)
DLLEXPORT_OST_MOL void	GetCaIndices (const EntityView &segment, std::vector< unsigned long > &indices_ca)
DLLEXPORT_OST_MOL void	GetCaCONIndices (const EntityView &segment, std::vector< unsigned long > &indices_ca, std::vector< unsigned long > &indices_c, std::vector< unsigned long > &indices_o, std::vector< unsigned long > &indices_n)