cluster Class Reference

Public Member Functions
def	__init__

Data Fields
	sequences
	representative_id
	alignment

Detailed Description

Holds the information of one cluster

.. attribute:: sequences
  
  SequenceList containing all sequences of the cluster

.. attribute:: representative_id

  a string, that contains the name of the representative sequence of the cluster
  as estimated by kClust. 
  
.. attribute:: alignment

  alignment handle containing a multiple sequence alignment of all sequences of
  the cluster. Gets only calculated when binding is called with appropriate flag.

Definition at line 19 of file kclust.py.

Constructor & Destructor Documentation

def __init__	(		self,
			sequences,
			representative_id
	)

Definition at line 39 of file kclust.py.

Field Documentation

alignment

Definition at line 43 of file kclust.py.

representative_id

Definition at line 42 of file kclust.py.

sequences

Definition at line 41 of file kclust.py.

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The documentation for this class was generated from the following file:

• stage/lib64/python2.7/site-packages/ost/bindings/kclust.py