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Public Member Functions
SequenceIOHandler Class Referenceabstract

#include <sequence_io_handler.hh>

Inherited by ClustalIOHandler, ClustalIOHandler, FastaIOHandler, FastaIOHandler, PirIOHandler, PirIOHandler, PromodIOHandler, and PromodIOHandler.

Public Member Functions

virtual ~SequenceIOHandler ()
 
virtual void Import (seq::SequenceList &sequences, const boost::filesystem::path &loc)=0
 
virtual void Export (const seq::ConstSequenceList &ent, const boost::filesystem::path &loc) const =0
 
virtual void Import (seq::SequenceList &ent, std::istream &instream)=0
 
virtual void Export (const seq::ConstSequenceList &ent, std::ostream &ostream) const =0
 
virtual ~SequenceIOHandler ()
 
virtual void Import (seq::SequenceList &sequences, const boost::filesystem::path &loc)=0
 
virtual void Export (const seq::ConstSequenceList &ent, const boost::filesystem::path &loc) const =0
 
virtual void Import (seq::SequenceList &ent, std::istream &instream)=0
 
virtual void Export (const seq::ConstSequenceList &ent, std::ostream &ostream) const =0
 

Detailed Description

pure abstract base class for entity io handlers

Definition at line 33 of file sequence_io_handler.hh.

Constructor & Destructor Documentation

virtual ~SequenceIOHandler ( )
inlinevirtual

Definition at line 35 of file sequence_io_handler.hh.

virtual ~SequenceIOHandler ( )
inlinevirtual

Definition at line 35 of file sequence_io_handler.hh.

Member Function Documentation

virtual void Export ( const seq::ConstSequenceList &  ent,
const boost::filesystem::path &  loc 
) const
pure virtual

Implemented in PromodIOHandler, PromodIOHandler, ClustalIOHandler, FastaIOHandler, PirIOHandler, ClustalIOHandler, FastaIOHandler, and PirIOHandler.

virtual void Export ( const seq::ConstSequenceList &  ent,
const boost::filesystem::path &  loc 
) const
pure virtual

Implemented in PromodIOHandler, PromodIOHandler, ClustalIOHandler, FastaIOHandler, PirIOHandler, ClustalIOHandler, FastaIOHandler, and PirIOHandler.

virtual void Export ( const seq::ConstSequenceList &  ent,
std::ostream &  ostream 
) const
pure virtual

Implemented in PromodIOHandler, PromodIOHandler, ClustalIOHandler, FastaIOHandler, PirIOHandler, ClustalIOHandler, FastaIOHandler, and PirIOHandler.

virtual void Export ( const seq::ConstSequenceList &  ent,
std::ostream &  ostream 
) const
pure virtual

Implemented in PromodIOHandler, PromodIOHandler, ClustalIOHandler, FastaIOHandler, PirIOHandler, ClustalIOHandler, FastaIOHandler, and PirIOHandler.

virtual void Import ( seq::SequenceList &  sequences,
const boost::filesystem::path &  loc 
)
pure virtual

Implemented in PromodIOHandler, PromodIOHandler, ClustalIOHandler, FastaIOHandler, PirIOHandler, ClustalIOHandler, FastaIOHandler, and PirIOHandler.

virtual void Import ( seq::SequenceList &  sequences,
const boost::filesystem::path &  loc 
)
pure virtual

Implemented in PromodIOHandler, PromodIOHandler, ClustalIOHandler, FastaIOHandler, PirIOHandler, ClustalIOHandler, FastaIOHandler, and PirIOHandler.

virtual void Import ( seq::SequenceList &  ent,
std::istream &  instream 
)
pure virtual

Implemented in PromodIOHandler, PromodIOHandler, ClustalIOHandler, FastaIOHandler, PirIOHandler, ClustalIOHandler, FastaIOHandler, and PirIOHandler.

virtual void Import ( seq::SequenceList &  ent,
std::istream &  instream 
)
pure virtual

Implemented in PromodIOHandler, PromodIOHandler, ClustalIOHandler, FastaIOHandler, PirIOHandler, ClustalIOHandler, FastaIOHandler, and PirIOHandler.

The documentation for this class was generated from the following files:
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