HHblitsHit Class Reference

Public Member Functions
def	__init__

Data Fields
	hit_id
	aln
	score
	ss_score
	evalue
	prob
	pvalue

Detailed Description

A hit found by HHblits

.. attribute:: hit_id

  String identifying the hit

  :type: :class:`str`

.. attribute:: aln

  Pairwise alignment containing the aligned part between the query and the
  target. First sequence is the query, the second sequence the target.

  :type: :class:`~ost.seq.AlignmentHandle`

.. attribute:: score

  The alignment score

  :type: :class:`float`

.. attribute:: ss_score

  The secondary structure score

  :type: :class:`float`

.. attribute:: evalue

  The E-value of the alignment

  :type: :class:`float`

.. attribute:: pvalue

  The P-value of the alignment

  :type: :class:`float`

.. attribute:: prob

  The probability of the alignment (between 0 and 100)

  :type: :class:`float`

Definition at line 14 of file hhblits.py.

Constructor & Destructor Documentation

def __init__	(		self,
			hit_id,
			aln,
			score,
			ss_score,
			evalue,
			pvalue,
			prob
	)

Definition at line 61 of file hhblits.py.

Field Documentation

aln

Definition at line 63 of file hhblits.py.

evalue

Definition at line 66 of file hhblits.py.

hit_id

Definition at line 62 of file hhblits.py.

prob

Definition at line 67 of file hhblits.py.

pvalue

Definition at line 68 of file hhblits.py.

score

Definition at line 64 of file hhblits.py.

ss_score

Definition at line 65 of file hhblits.py.

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The documentation for this class was generated from the following file:

• stage/lib64/python2.7/site-packages/ost/bindings/hhblits.py