HHblitsHeader Class Reference

Public Member Functions
def	__init__

Data Fields
	query
	match_columns
	n_eff
	searched_hmms
	date
	command

Detailed Description

Stats from the beginning of search output.

.. attribute:: query

  The name of the query sequence

  :type: :class:`str`

.. attribute:: match_columns

  Total of aligned Match columns

  :type: :class:`int`

.. attribute:: n_eff

  Value of the ``-neff`` option

  :type: :class:`float`

.. attribute:: searched_hmms

  Number of profiles searched

  :type: :class:`int`

.. attribute:: date

  Execution date

  :type: :class:`datetime.datetime`

.. attribute:: command

  Command used to run

  :type: :class:`str`

Definition at line 70 of file hhblits.py.

Constructor & Destructor Documentation

def __init__

(

self

)

Definition at line 109 of file hhblits.py.

Field Documentation

command

Definition at line 115 of file hhblits.py.

date

Definition at line 114 of file hhblits.py.

match_columns

Definition at line 111 of file hhblits.py.

n_eff

Definition at line 112 of file hhblits.py.

query

Definition at line 110 of file hhblits.py.

searched_hmms

Definition at line 113 of file hhblits.py.

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The documentation for this class was generated from the following file:

• stage/lib64/python2.7/site-packages/ost/bindings/hhblits.py