iAlignResult Class Reference

Public Member Functions
def	__init__

Data Fields
	rmsd
	transform
	alignment
	is_score
	aligned_residues
	aligned_contacts

Detailed Description

Holds the result of running iAlign

.. attribute:: rmsd
  
  The RMSD of the common Calpha atoms of both structures

.. attribute:: transform

  The transform that superposes the model onto the reference structure.
  
  :type: :class:`~ost.geom.Mat4`

.. attribute:: alignment

  The alignment of the structures, that is the pairing of Calphas of both 
  structures. Since the programs only read ATOM records, residues consisting 
  of HETATMs (MSE) are not included in the alignment.
  
  :type: :class:`~ost.seq.AlignmentHandle`

.. attribute:: IS_score

  The IS-score of the structural superposition

.. attribute:: aligned_residues

  The total number of aligned residues

.. attribute:: aligned_contacts

  The total number of aligned contacts

Definition at line 55 of file ialign.py.

Constructor & Destructor Documentation

def __init__	(		self,
			rmsd,
			transform,
			alignment,
			is_score,
			aligned_residues,
			aligned_contacts
	)

Definition at line 91 of file ialign.py.

Field Documentation

aligned_contacts

Definition at line 98 of file ialign.py.

aligned_residues

Definition at line 97 of file ialign.py.

alignment

Definition at line 95 of file ialign.py.

is_score

Definition at line 96 of file ialign.py.

rmsd

Definition at line 93 of file ialign.py.

transform

Definition at line 94 of file ialign.py.

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The documentation for this class was generated from the following file:

• stage/lib64/python2.7/site-packages/ost/bindings/ialign.py