SequenceModel Class Reference

#include <sequence_model.hh>

Inherits QAbstractTableModel.

Public Slots
void	ZoomIn ()
void	ZoomOut ()
void	DoubleClicked (const QModelIndex &index)
void	SelectionChanged (const QItemSelection &sel, const QItemSelection &desel)

Public Member Functions
	SequenceModel (QObject *parent=0)
void	InsertAlignment (const seq::AlignmentHandle &alignment)
void	InsertGfxEntity (const gfx::EntityP &entity)
void	InsertChain (QString &name, mol::ChainView &view)
void	InsertSequence (QString &name, seq::SequenceHandle &seq)
void	InsertSequences (const QList< QString > &names, seq::SequenceList &list)
void	RemoveAlignment (const seq::AlignmentHandle &alignment)
void	RemoveGfxEntity (const gfx::EntityP &entity)
QModelIndexList	GetModelIndexes (gfx::EntityP &entity, const mol::EntityView &view)
QModelIndexList	GetModelIndexes (const QString &subject, const QString &sequence_name=QString())
int	GetGlobalRow (BaseViewObject *obj, int row) const
const QStringList &	GetDisplayModes ()
const QStringList &	GetDisplayModes (const gfx::EntityP &entity)
const QStringList &	GetDisplayModes (const seq::AlignmentHandle &alignment)
const QString &	GetCurrentDisplayMode ()
const QString &	GetCurrentDisplayMode (const gfx::EntityP &entity)
const QString &	GetCurrentDisplayMode (const seq::AlignmentHandle &alignment)
void	SetDisplayMode (const QString &mode)
void	SetDisplayMode (const gfx::EntityP &entity, const QString &mode)
void	SetDisplayMode (const seq::AlignmentHandle &alignment, const QString &mode)
const PainterList &	GetPainters (const QModelIndex &index) const
int	rowCount (const QModelIndex &parent=QModelIndex()) const
int	columnCount (const QModelIndex &parent=QModelIndex()) const
QVariant	data (const QModelIndex &index, int role=Qt::DisplayRole) const
QVariant	headerData (int section, Qt::Orientation orientation, int role=Qt::DisplayRole) const
virtual Qt::ItemFlags	flags (const QModelIndex &index=QModelIndex()) const
QPair< seq::AlignmentHandle, int >	GetAlignmentForRow (int row)
void	EmitRowChanged (int row)
void	Clear ()

Detailed Description

Definition at line 45 of file sequence_model.hh.

Constructor & Destructor Documentation

SequenceModel

(

QObject *

parent = 0

)

Member Function Documentation

void Clear

(

)

int columnCount

(

const QModelIndex &

parent = QModelIndex()

)

const

QVariant data	(	const QModelIndex &	index,
		int	role = Qt::DisplayRole
	)		const

void DoubleClicked ( const QModelIndex &  index )

slot

void EmitRowChanged

(

int

row

)

virtual Qt::ItemFlags flags ( const QModelIndex &  index = QModelIndex() ) const

virtual

QPair<seq::AlignmentHandle, int> GetAlignmentForRow

(

int

row

)

const QString& GetCurrentDisplayMode

(

)

const QString& GetCurrentDisplayMode

(

const gfx::EntityP &

entity

)

const QString& GetCurrentDisplayMode

(

const seq::AlignmentHandle &

alignment

)

const QStringList& GetDisplayModes

(

)

const QStringList& GetDisplayModes

(

const gfx::EntityP &

entity

)

const QStringList& GetDisplayModes

(

const seq::AlignmentHandle &

alignment

)

int GetGlobalRow	(	BaseViewObject *	obj,
		int	row
	)		const

QModelIndexList GetModelIndexes	(	gfx::EntityP &	entity,
		const mol::EntityView &	view
	)

QModelIndexList GetModelIndexes	(	const QString &	subject,
		const QString &	sequence_name = QString()
	)

const PainterList& GetPainters

(

const QModelIndex &

index

)

const

QVariant headerData	(	int	section,
		Qt::Orientation	orientation,
		int	role = Qt::DisplayRole
	)		const

void InsertAlignment

(

const seq::AlignmentHandle &

alignment

)

void InsertChain	(	QString &	name,
		mol::ChainView &	view
	)

void InsertGfxEntity

(

const gfx::EntityP &

entity

)

void InsertSequence	(	QString &	name,
		seq::SequenceHandle &	seq
	)

void InsertSequences	(	const QList< QString > &	names,
		seq::SequenceList &	list
	)

void RemoveAlignment

(

const seq::AlignmentHandle &

alignment

)

void RemoveGfxEntity

(

const gfx::EntityP &

entity

)

int rowCount

(

const QModelIndex &

parent = QModelIndex()

)

const

void SelectionChanged ( const QItemSelection &  sel, const QItemSelection &  desel  )

slot

void SetDisplayMode

(

const QString &

mode

)

void SetDisplayMode	(	const gfx::EntityP &	entity,
		const QString &	mode
	)

void SetDisplayMode	(	const seq::AlignmentHandle &	alignment,
		const QString &	mode
	)

void ZoomIn ( )

slot

void ZoomOut ( )

slot

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The documentation for this class was generated from the following file:

• stage/include/ost/gui/sequence_viewer/sequence_model.hh