ost.bindings.lga Namespace Reference

Data Structures
class	GDTResult

Functions
	_FindLGABinary (lga_bin)
	_PrepareInput (pdb1, pdb2, output_pdb)
	_ParseRotationAndShift (lines)
	_ParseGDTSection (section, residue_count)
	_ParseLGAOutput (output, residue_count)
	GDT (pdb1, pdb2, chain1='', chain2='', reference_length=None, lga_bin=None)

Detailed Description

Interface to LGA

Author: Marco Biasini

Function Documentation

_FindLGABinary()

_FindLGABinary (   lga_bin )

protected

Definition at line 13 of file lga.py.

_ParseGDTSection()

_ParseGDTSection (   section,   residue_count  )

protected

Definition at line 51 of file lga.py.

_ParseLGAOutput()

_ParseLGAOutput (   output,   residue_count  )

protected

Definition at line 64 of file lga.py.

_ParseRotationAndShift()

_ParseRotationAndShift (   lines )

protected

Definition at line 40 of file lga.py.

_PrepareInput()

_PrepareInput (   pdb1,   pdb2,   output_pdb  )

protected

Deal with the brain-dead input requirements of LGA.

Definition at line 17 of file lga.py.

GDT()

GDT	(		pdb1,
			pdb2,
			chain1 = '',
			chain2 = '',
			reference_length = None,
			lga_bin = None
	)

Calculate GDT value between pdb1 and pdb2. It is assumed that the
corresponding residues in pdb1 and pdb2 have the same residue numbers.

Definition at line 81 of file lga.py.