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map_io_mrc_handler.hh
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1//------------------------------------------------------------------------------
2// This file is part of the OpenStructure project <www.openstructure.org>
3//
4// Copyright (C) 2008-2020 by the OpenStructure authors
5// Copyright (C) 2003-2010 by the IPLT authors
6//
7// This library is free software; you can redistribute it and/or modify it under
8// the terms of the GNU Lesser General Public License as published by the Free
9// Software Foundation; either version 3.0 of the License, or (at your option)
10// any later version.
11// This library is distributed in the hope that it will be useful, but WITHOUT
12// ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
13// FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
14// details.
15//
16// You should have received a copy of the GNU Lesser General Public License
17// along with this library; if not, write to the Free Software Foundation, Inc.,
18// 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
19//------------------------------------------------------------------------------
20#ifndef OST_IO_MAP_IO_MRC_HANDLER_HH
21#define OST_IO_MAP_IO_MRC_HANDLER_HH
22
23#include "map_io_handler.hh"
24
25namespace ost { namespace io {
26
27class DLLEXPORT_OST_IO MRC: public ImageFormatBase
28{
29 public:
30
31 MRC(bool normalize_on_save = false, Subformat subformat = MRC_AUTO_FORMAT ,Endianess endianness_on_save = OST_LOCAL_ENDIAN, Format bit_depth = OST_DEFAULT_FORMAT);
32
34 void SetBitDepth ( Format bitdepth);
35
38
39 bool GetNormalizeOnSave() const;
40 void SetNormalizeOnSave(bool normalize_on_save);
41
43 void SetSubformat(Subformat subformat);
44
45 static String FORMAT_STRING;
46
47 private:
48
49 Subformat subformat_;
50 bool normalize_on_save_;
51 Endianess endianess_on_save_;
52 Format bit_depth_;
53};
54
55class DLLEXPORT_OST_IO CCP4: public MRC
56{
57 public:
58 CCP4(bool normalize_on_save = false, Endianess endianness_on_save = OST_LOCAL_ENDIAN, Format bit_depth = OST_DEFAULT_FORMAT);
59};
60
61typedef CCP4 MAP;
62
63class MapIOMrcHandler: public MapIOHandler {
64public:
65
67 is_file_(false),
68 filename_("") {}
69
74 virtual void Import(img::MapHandle& sh, const boost::filesystem::path& loc,const ImageFormatBase& formatstruct );
75 virtual void Import(img::MapHandle& sh, std::istream& loc, const ImageFormatBase& formatstruct);
76 virtual void Export(const img::MapHandle& sh, const boost::filesystem::path& loc, const ImageFormatBase& formatstruct) const;
77 virtual void Export(const img::MapHandle& sh, std::ostream& loc,const ImageFormatBase& formatstruct) const;
78 static bool MatchContent(unsigned char* header);
79 static bool MatchType(const ImageFormatBase& type);
80 static bool MatchSuffix(const String& loc);
81 static bool ProvidesImport() { return true; }
82 static bool ProvidesExport() { return true; }
83 static String GetFormatName() { return String("Mrc"); };
84 static String GetFormatDescription() { return String("Format used by the MRC software package"); };
85
86private:
87
88 mutable bool is_file_;
89 mutable String filename_;
90 char header_[256];
91
92};
93
94typedef MapIOHandlerFactory<MapIOMrcHandler> MapIOMrcHandlerFactory;
95
96}}
97
98
99#endif
Manage shared instances of images.
CCP4(bool normalize_on_save=false, Endianess endianness_on_save=OST_LOCAL_ENDIAN, Format bit_depth=OST_DEFAULT_FORMAT)
bool GetNormalizeOnSave() const
void SetNormalizeOnSave(bool normalize_on_save)
Format GetBitDepth() const
void SetSubformat(Subformat subformat)
Endianess GetEndianessOnSave() const
Subformat GetSubformat() const
void SetEndianessOnSave(Endianess end)
void SetBitDepth(Format bitdepth)
MRC(bool normalize_on_save=false, Subformat subformat=MRC_AUTO_FORMAT, Endianess endianness_on_save=OST_LOCAL_ENDIAN, Format bit_depth=OST_DEFAULT_FORMAT)
static bool MatchType(const ImageFormatBase &type)
virtual void Export(const img::MapHandle &sh, const boost::filesystem::path &loc, const ImageFormatBase &formatstruct) const
virtual void Import(img::MapHandle &sh, std::istream &loc, const ImageFormatBase &formatstruct)
static bool MatchContent(unsigned char *header)
virtual void Export(const img::MapHandle &sh, std::ostream &loc, const ImageFormatBase &formatstruct) const
static bool MatchSuffix(const String &loc)
static String GetFormatDescription()
virtual void Import(img::MapHandle &sh, const boost::filesystem::path &loc, const ImageFormatBase &formatstruct)
Map IO handler to read/write mrc and ccp4 map files.
#define DLLEXPORT_OST_IO
std::string String
Definition base.hh:54
MapIOHandlerFactory< MapIOMrcHandler > MapIOMrcHandlerFactory
Definition base.dox:1