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ost::mol::impl Namespace Reference

Namespaces

 tok
 

Data Structures

struct  AtomGroupEntry
 
struct  AtomGroup
 
class  AtomImpl
 
class  AtomProp
 
class  ChainImpl
 
class  ConnectorImpl
 
class  Dihedral
 
class  EntityImpl
 
class  FragmentImpl
 
class  pointer_it
 
class  WithinParam
 
class  StringOrRegexParam
 
class  Node
 
class  LogicOPNode
 
class  SelNode
 
class  QueryToken
 
class  QueryLexer
 
struct  SelStmt
 
struct  SelItem
 
struct  GenProp
 
class  QueryImpl
 
class  ResidueImpl
 
class  SurfaceImpl
 
class  TorsionImpl
 

Typedefs

typedef std::vector
< AtomGroupEntry
AtomGroupEntryList
 
typedef std::map< String,
AtomGroup
AtomEntryGroups
 
typedef boost::shared_ptr
< AtomImpl
AtomImplPtr
 
typedef std::vector< AtomImplPtrAtomImplList
 
typedef boost::weak_ptr< AtomImplAtomImplW
 
typedef std::vector< AtomImplWAtomImplWList
 
typedef boost::shared_ptr
< ChainImpl
ChainImplPtr
 
typedef boost::weak_ptr
< ChainImpl
ChainImplW
 
typedef boost::shared_ptr
< ConnectorImpl
ConnectorImplP
 
typedef boost::weak_ptr
< ConnectorImpl
ConnectorImplW
 
typedef std::list< ConnectorImplPConnectorImplList
 
typedef std::map< AtomImpl
*, AtomImplPtr
AtomImplMap
 
typedef std::map< ResidueImpl
*, ResidueImplPtr
ResidueImplMap
 
typedef std::vector< ChainImplPtrChainImplList
 
typedef std::map
< ConnectorImpl
*, ConnectorImplP
ConnectorImplMap
 
typedef std::map< TorsionImpl
*, TorsionImplP
TorsionImplMap
 
typedef std::vector
< FragmentImplP
FragmentImplList
 
typedef std::map
< EntityObserver
*, EntityObserverPtr
EntityObserverMap
 
typedef SpatialOrganizer
< AtomImplPtr
SpatialAtomOrganizer
 
typedef boost::shared_ptr
< EntityImpl
EntityImplPtr
 
typedef boost::weak_ptr
< EntityImpl
EntityImplW
 
typedef boost::shared_ptr
< FragmentImpl
FragmentImplP
 
typedef boost::variant< int,
Real, WithinParam,
StringOrRegexParam
ParamType
 
typedef std::vector< SelItemSelStack
 
typedef std::vector< SelStmtSelStmts
 
typedef boost::shared_ptr
< QueryImpl
QueryImplP
 
typedef boost::shared_ptr
< ResidueImpl
ResidueImplPtr
 
typedef boost::weak_ptr
< ResidueImpl
ResidueImplW
 
typedef std::vector
< ResidueImplPtr
ResidueImplList
 
typedef SpatialOrganizer
< SurfaceVertexID
SpatialSurfaceVertexOrganizer
 
typedef boost::shared_ptr
< SurfaceImpl
SurfaceImplP
 
typedef boost::shared_ptr
< TorsionImpl
TorsionImplP
 
typedef std::vector< TorsionImplPTorsionImplList
 

Enumerations

enum  EntityDirtyFlags {
  DirtyICS =1, DirtyXCS =2, DirtyTrace =DirtyICS+4, DirtyOrganizer =8,
  DisableICS =16
}
 
enum  LogicOP { LOP_OR, LOP_AND }
 
enum  CompOP {
  COP_EQ, COP_NEQ, COP_GE, COP_LE,
  COP_LT, COP_GT
}
 
enum  SelItemType { LOGIC, VALUE }
 

Functions

std::ostream & operator<< (std::ostream &o, const AtomImplPtr ap)
 
bool ConnectorExists (const AtomImplPtr &a, const AtomImplPtr &b)
 
ConnectorImplP GetConnector (const AtomImplPtr &a, const AtomImplPtr &b)
 
template<typename T >
pointer_it< T > begin (const std::vector< T > &values)
 
template<typename T >
pointer_it< T > end (const std::vector< T > &values)
 

Typedef Documentation

typedef std::map<String, AtomGroup> AtomEntryGroups

Definition at line 48 of file atom_group.hh.

typedef std::vector<AtomGroupEntry> AtomGroupEntryList

Definition at line 41 of file atom_group.hh.

typedef std::vector<AtomImplPtr> AtomImplList

Definition at line 38 of file atom_impl_fw.hh.

typedef std::map<AtomImpl*,AtomImplPtr> AtomImplMap

Definition at line 54 of file entity_impl.hh.

typedef boost::shared_ptr<AtomImpl> AtomImplPtr

Definition at line 33 of file atom_impl_fw.hh.

typedef boost::weak_ptr<AtomImpl> AtomImplW

Definition at line 40 of file atom_impl_fw.hh.

typedef std::vector<AtomImplW> AtomImplWList

Definition at line 42 of file atom_impl_fw.hh.

typedef std::vector<ChainImplPtr> ChainImplList

Definition at line 58 of file entity_impl.hh.

typedef boost::shared_ptr<ChainImpl> ChainImplPtr

Definition at line 28 of file chain_impl_fw.hh.

typedef boost::weak_ptr<ChainImpl> ChainImplW

Definition at line 30 of file chain_impl_fw.hh.

typedef std::list<ConnectorImplP> ConnectorImplList

Definition at line 30 of file connector_impl_fw.hh.

Definition at line 60 of file entity_impl.hh.

typedef boost::shared_ptr<ConnectorImpl> ConnectorImplP

Definition at line 27 of file connector_impl_fw.hh.

typedef boost::weak_ptr<ConnectorImpl> ConnectorImplW

Definition at line 29 of file connector_impl_fw.hh.

typedef boost::shared_ptr<EntityImpl> EntityImplPtr

Definition at line 27 of file entity_impl_fw.hh.

typedef boost::weak_ptr<EntityImpl> EntityImplW

Definition at line 32 of file entity_impl_fw.hh.

Definition at line 66 of file entity_impl.hh.

typedef std::vector<FragmentImplP> FragmentImplList

Definition at line 64 of file entity_impl.hh.

typedef boost::shared_ptr<FragmentImpl> FragmentImplP

Definition at line 28 of file fragment_impl_fw.hh.

typedef boost::variant<int, Real, WithinParam, StringOrRegexParam> ParamType

Definition at line 71 of file query_ast.hh.

typedef boost::shared_ptr<QueryImpl> QueryImplP

Definition at line 27 of file query_impl_fw.hh.

typedef std::vector<ResidueImplPtr> ResidueImplList

Definition at line 37 of file residue_impl_fw.hh.

Definition at line 56 of file entity_impl.hh.

typedef boost::shared_ptr<ResidueImpl> ResidueImplPtr

Definition at line 28 of file residue_impl_fw.hh.

typedef boost::weak_ptr<ResidueImpl> ResidueImplW

Definition at line 34 of file residue_impl_fw.hh.

typedef std::vector<SelItem> SelStack

Definition at line 157 of file query_impl.hh.

typedef std::vector<SelStmt> SelStmts

Definition at line 160 of file query_impl.hh.

Definition at line 68 of file entity_impl.hh.

Definition at line 32 of file surface_impl.hh.

typedef boost::shared_ptr<SurfaceImpl> SurfaceImplP

Definition at line 26 of file surface_impl_fw.hh.

typedef std::vector<TorsionImplP> TorsionImplList

Definition at line 33 of file torsion_impl_fw.hh.

Definition at line 62 of file entity_impl.hh.

typedef boost::shared_ptr<TorsionImpl> TorsionImplP

Definition at line 27 of file torsion_impl_fw.hh.

Enumeration Type Documentation

enum CompOP
Enumerator
COP_EQ 
COP_NEQ 
COP_GE 
COP_LE 
COP_LT 
COP_GT 

Definition at line 34 of file query_ast_fw.hh.

Enumerator
DirtyICS 
DirtyXCS 
DirtyTrace 
DirtyOrganizer 
DisableICS 

Definition at line 71 of file entity_impl.hh.

enum LogicOP
Enumerator
LOP_OR 
LOP_AND 

Definition at line 30 of file query_ast_fw.hh.

Enumerator
LOGIC 
VALUE 

Definition at line 135 of file query_impl.hh.

Function Documentation

pointer_it<T> ost::mol::impl::begin ( const std::vector< T > &  values)
inline

Definition at line 66 of file pointer_iterator.hh.

bool ost::mol::impl::ConnectorExists ( const AtomImplPtr &  a,
const AtomImplPtr &  b 
)
pointer_it<T> ost::mol::impl::end ( const std::vector< T > &  values)
inline

Definition at line 72 of file pointer_iterator.hh.

ConnectorImplP ost::mol::impl::GetConnector ( const AtomImplPtr &  a,
const AtomImplPtr &  b 
)
std::ostream& ost::mol::impl::operator<< ( std::ostream &  o,
const AtomImplPtr  ap 
)