- p -
- PagedArray()
: PagedArray< T, P >
- Paint()
: AlignPropertiesPainter
, ConservationPainter
, SeqTextPainter
, TickPainter
, Painter
- paint()
: SequenceDelegate
- Paint()
: BackgroundPainter
, SeqSecStrPainter
, SeqSelectionPainter
- PaintBackground()
: LevelPreview
- PaintBins()
: LevelPreview
- Painter()
: Painter
- paintEvent()
: Gutter
, SeqSearchBar
, ColorSelectWidget
, GradientPreview
, LevelPreview
, Argand
, DataViewerPanelBase
- paintGL()
: GLCanvas
- PaintLevel()
: LevelPreview
- PaintMouse()
: LevelPreview
- PairDist()
: QSEntity
- PairedTTest()
: Table
- PairSubstWeightMatrix()
: PairSubstWeightMatrix
- PanelBar()
: PanelBar
- PanelBarWidgetHolder()
: PanelBarWidgetHolder
- PanelManager()
: PanelManager
- PanelWidgetContainer()
: PanelWidgetContainer
- parent()
: SceneWinModel
- ParentDataObserver()
: ParentDataObserver
- Parse()
: PythonContextParser
, StarParser
, AAIndexData
- ParseAndAddAtom()
: MMCifReader
- ParseAtomIdent()
: MMCifReader
- ParseCitation()
: MMCifReader
- ParseCitationAuthor()
: MMCifReader
- ParseDatabasePDBRev()
: MMCifReader
- ParseEntity()
: MMCifReader
- ParseEntityPoly()
: MMCifReader
- ParseExptl()
: MMCifReader
- ParsePdbxAuditRevisionDetails()
: MMCifReader
- ParsePdbxAuditRevisionHistory()
: MMCifReader
- ParsePdbxDatabasePdbObsSpr()
: MMCifReader
- ParsePdbxDatabaseStatus()
: MMCifReader
- ParsePdbxEntityBranch()
: MMCifReader
- ParsePdbxEntityBranchLink()
: MMCifReader
- ParsePdbxStructAssembly()
: MMCifReader
- ParsePdbxStructAssemblyGen()
: MMCifReader
- ParsePdbxStructOperList()
: MMCifReader
- ParseRefine()
: MMCifReader
- ParseStruct()
: MMCifReader
- ParseStructConf()
: MMCifReader
- ParseStructRef()
: MMCifReader
- ParseStructRefSeq()
: MMCifReader
- ParseStructRefSeqDif()
: MMCifReader
- ParseStructSheetRange()
: MMCifReader
- Paste()
: ImageHandle
- PasteFnc()
: PasteFnc
- PasteRotation()
: Mat4
- PasteTranslation()
: Mat4
- patch_dockq()
: Scorer
- patch_qs()
: Scorer
- PathCompleter()
: PathCompleter
- pathFromIndex()
: PythonCompleter
- PDBize()
: PDBize
- PDBReader()
: PDBReader
- PDBWriter()
: PDBWriter
- Peak()
: Peak
- pepnuc_aln()
: Scorer
- per_interface_ics()
: Scorer
- per_interface_ics_precision()
: Scorer
- per_interface_ics_recall()
: Scorer
- per_interface_ips()
: Scorer
- per_interface_ips_precision()
: Scorer
- per_interface_ips_recall()
: Scorer
- per_interface_qs_best()
: Scorer
- per_interface_qs_global()
: Scorer
- PerceiveRings()
: RingFinder
- Percentiles()
: Table
- Perspective()
: Perspective
- Phase()
: Phase
- Pick()
: Scene
- PickAtom()
: Entity
, ConnectRendererBase
, EntityRenderer
, TraceRendererBase
, Scene
- PickBond()
: Entity
, ConnectRendererBase
, EntityRenderer
, TraceRendererBase
- Pixel()
: RasterImage::Pixel
- PixelSampling()
: PixelSampling
- Plane()
: Plane
- Plot()
: Table
- PlotBar()
: Table
- PlotEnrichment()
: Table
- PlotHexbin()
: Table
- PlotHistogram()
: Table
- PlotLogROC()
: Table
- PlotROC()
: Table
- PNG()
: PNG
- PodVector()
: PodVector< T >
- Point()
: Point
- Point2Coord()
: PixelSampling
- Point2Index()
: FrequencyDomain
, HalfFrequencyDomain
, SpatialDomain
- Point2Offset()
: Extent
- pointer_it()
: pointer_it< T >
- PointList()
: PointList
- PointlistOverlay()
: PointlistOverlay
- PointlistOverlayBase()
: PointlistOverlayBase
- PointlistOverlayBaseSettings()
: PointlistOverlayBaseSettings
- PointToWin()
: DataViewerPanelBase
- Polar()
: Polar
- Polygon2()
: Polygon2
- PolygonMask()
: PolygonMask
- polynuc_seqs()
: ChainMapper
- polypep_seqs()
: ChainMapper
- PooledWidget()
: PooledWidget
- Pop()
: SymmetryOp
- pop_back()
: PodVector< T >
- PopFile()
: Logger
- PopProgram()
: Shader
- PopSink()
: Logger
- PopVerbosityLevel()
: Logger
- PopView()
: Scene
- Postprocess()
: SceneFX
- PotentialInteraction()
: QSEntity
- pov()
: PovState
- PovState()
: PovState
- PowerSpectrumFnc()
: PowerSpectrumFnc
- PowFnc()
: PowFnc
- PQRReader()
: PQRReader
- PQRWriter()
: PQRWriter
- precision()
: ContactScorerResultICS
, ContactScorerResultIPS
- PreGLInit()
: Shader
- Prepare()
: Database
- PrepareColoring()
: ByEntityWidget
- PreparedStatement()
: PreparedStatement
- PrepareRendering()
: SlineRenderer
, EntityRenderer
, CartoonRenderer
, ConnectRendererBase
, CPKRenderer
, CustomRenderer
, DebugRenderer
, LineTraceRenderer
, SimpleRenderer
, TraceRenderer
, TraceRendererBase
- PrepList()
: BackboneTrace
- Preprocess()
: SceneFX
- PreRenderGL()
: GfxObj
- Primitive()
: Primitive
- PrimList()
: PrimList
- Print()
: PythonContext
, PythonContextParser
- print_report()
: _XMLTestResult
, _TestInfo
- PrintAllDistances()
: ClashingDistances
- PrintAllParameters()
: StereoChemicalParams
- PrintParameters()
: lDDTSettings
- PrintPerResidueStats()
: lDDTScorer
- Process()
: Processor
, MMPreprocessor
- ProcessEvents()
: GostyApp
- ProcessLimits()
: PrimList
, GfxObj
- Processor()
: Processor
- ProcessStructure()
: ChainMapper
- ProcessUnkAtoms()
: RuleBasedProcessor
- ProcessUnkResidue()
: HeuristicProcessor
, RuleBasedProcessor
- Profile()
: Profile
- profile_length()
: ContextProfileDB
- ProfileColumn()
: ProfileColumn
- ProfileHandle()
: ProfileHandle
- Project()
: Scene
- Prop()
: Prop
, PropertyError
- PropertyError()
: PropertyError
- ProvidesExport()
: DF3MapIOHandler
, HhmIOHandler
, MapIODatHandler
, EntityIOPDBHandler
, EntityIOMAEHandler
, MapIOHandlerFactoryBase
, MapIODxHandler
, MapIOTiffHandler
, EntityIOHandlerFactoryBase
, ClustalIOHandler
, EntityIOCRDHandler
, FastaIOHandler
, EntityIOPQRHandler
, EntityIOSDFHandler
, EntityIOMMCIFHandler
, MapIOIPLHandler
, MapIOMrcHandler
, MapIONanoscopeHandler
, MapIOSitusHandler
, DF3MapIOHandler
, MapIODxHandler
, MapIODm3Handler
, MapIOSitusHandler
, MapIOSpiHandler
, MapIOTiffHandler
, EntityIOHandlerFactoryBase
, EntityIOPQRHandler
, SurfaceIOHandlerFactoryBase
, PirIOHandler
, ClustalIOHandler
, FastaIOHandler
, HhmIOHandler
, ProfileIOHandlerFactoryBase
, SequenceIOHandlerFactoryBase
, SurfaceIOMSMSHandler
, MapIOSpiHandler
, MapIODm3Handler
, SequenceIOHandlerFactoryBase
, EntityIOSDFHandler
, SurfaceIOHandlerFactoryBase
, MapIOMrcHandler
, PirIOHandler
, MapIONanoscopeHandler
, PromodIOHandler
, PssmIOHandler
, EntityIOMAEHandler
, SurfaceIOMSMSHandler
, PromodIOHandler
, EntityIOMMCIFHandler
, ProfileIOHandlerFactoryBase
, EntityIOPDBHandler
, EntityIOCRDHandler
, MapIOPngHandler
, MapIOHandlerFactoryBase
, PssmIOHandler
, MapIODatHandler
, MapIOPngHandler
- ProvidesImport()
: MapIOTiffHandler
, MapIOPngHandler
, MapIODatHandler
, MapIODxHandler
, MapIONanoscopeHandler
, PssmIOHandler
, MapIOSitusHandler
, EntityIOPQRHandler
, MapIOPngHandler
, MapIODm3Handler
, ProfileIOHandlerFactoryBase
, MapIOIPLHandler
, PromodIOHandler
, MapIOMrcHandler
, EntityIOHandlerFactoryBase
, PirIOHandler
, EntityIOPDBHandler
, SurfaceIOMSMSHandler
, EntityIOCRDHandler
, HhmIOHandler
, MapIODm3Handler
, EntityIOPDBHandler
, EntityIOMAEHandler
, EntityIOCRDHandler
, PromodIOHandler
, SequenceIOHandlerFactoryBase
, FastaIOHandler
, MapIOMrcHandler
, SurfaceIOHandlerFactoryBase
, ClustalIOHandler
, MapIOHandlerFactoryBase
, DF3MapIOHandler
, MapIOSpiHandler
, PssmIOHandler
, FastaIOHandler
, SurfaceIOMSMSHandler
, EntityIOMAEHandler
, MapIODatHandler
, MapIOIPLHandler
, MapIOTiffHandler
, EntityIOPQRHandler
, MapIONanoscopeHandler
, EntityIOMMCIFHandler
, EntityIOSDFHandler
, MapIOHandlerFactoryBase
, SurfaceIOHandlerFactoryBase
, EntityIOHandlerFactoryBase
, MapIODxHandler
, HhmIOHandler
, MapIOSitusHandler
, MapIOSpiHandler
, SequenceIOHandlerFactoryBase
, PirIOHandler
, ProfileIOHandlerFactoryBase
, DF3MapIOHandler
, EntityIOSDFHandler
, EntityIOMMCIFHandler
, ClustalIOHandler
- Prune()
: EditorBase
- Ptr()
: PtrObserver< T >
- PtrObserver()
: PtrObserver< T >
- Push()
: SymmetryOp
- push_back()
: PagedArray< T, P >
, PodVector< T >
- PushFile()
: Logger
- PushProgram()
: Shader
- PushSink()
: Logger
- PushVerbosityLevel()
: Logger
- PushView()
: Scene
- PyShell()
: PythonShell
- PythonCompleter()
: PythonCompleter
- PythonContext()
: PythonContext
- PythonContextParser()
: PythonContextParser
- PythonInterpreter()
: PythonInterpreter
- PythonInterpreterWorker()
: PythonInterpreterWorker
- PythonShell()
: PythonShell
- PythonShellTextDocumentLayout()
: PythonShellTextDocumentLayout
- PythonShellWidget()
: PythonShellWidget
- PythonSyntaxHighlighter()
: PythonSyntaxHighlighter
- PythonToken()
: PythonToken
- PythonTokenizer()
: PythonTokenizer