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promod_io_handler.hh
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1 //------------------------------------------------------------------------------
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3 //
4 // Copyright (C) 2008-2020 by the OpenStructure authors
5 //
6 // This library is free software; you can redistribute it and/or modify it under
7 // the terms of the GNU Lesser General Public License as published by the Free
8 // Software Foundation; either version 3.0 of the License, or (at your option)
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12 // FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
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18 //------------------------------------------------------------------------------
19 #ifndef OST_IO_PROMOD_IO_HANDLER_HH
20 #define OST_IO_PROMOD_IO_HANDLER_HH
21 
22 /*
23  Author: Marco Biasini
24  */
25 
27 
28 namespace ost { namespace io {
29 
30 class DLLEXPORT_OST_IO PromodIOHandler : public SequenceIOHandler{
31 public:
32  virtual void Import(seq::SequenceList& ali,
33  const boost::filesystem::path& loc);
34 
35  virtual void Export(const seq::ConstSequenceList& ent,
36  const boost::filesystem::path& loc) const;
37 
38  virtual void Import(seq::SequenceList& ent,
39  std::istream& instream);
40 
41  virtual void Export(const seq::ConstSequenceList& ent,
42  std::ostream& ostream) const;
43 
44  static bool ProvidesImport(const boost::filesystem::path& loc,
45  const String& format="auto");
46  static bool ProvidesExport(const boost::filesystem::path& loc,
47  const String& format="auto");
48 
49  static String GetFormatName() { return String("ProMod"); }
50  static String GetFormatDescription() { return String("Format used by the SwissModel modeling server"); }
51 };
52 
53 typedef SequenceIOHandlerFactory<PromodIOHandler> PromodIOHandlerFactory;
54 
55 }}
56 
57 #endif
SequenceIOHandlerFactory< PromodIOHandler > PromodIOHandlerFactory
std::string String
Definition: base.hh:54
std::vector< SequenceImplPtr > SequenceList
#define DLLEXPORT_OST_IO
static String GetFormatDescription()