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ins_del.hh
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18 //------------------------------------------------------------------------------
19 #ifndef OST_SEQ_ALG_INS_DEL_HH
20 #define OST_SEQ_ALG_INS_DEL_HH
21 
22 /*
23  Author: Marco Biasini
24  */
28 
29 namespace ost { namespace seq { namespace alg {
30 
44 public:
46  InsDel(const AlignmentHandle& aln, int seq_a=0, int seq_b=1);
48  AlignedRegionList GetInsertions(int ref) const;
50  AlignedRegionList GetDeletions(int ref) const;
51 private:
52  AlignmentHandle aln_;
53  int seq_a_;
54  int seq_b_;
55  AlignedRegionList insdels_;
56 };
57 
58 }}}
59 
60 #endif
get insertions and deletions of an alignment
Definition: ins_del.hh:43
#define DLLEXPORT_OST_SEQ_ALG
representation of a multiple sequence alignemnt consisting of two or more sequences ...
std::vector< AlignedRegion > AlignedRegionList