ost::db Namespace Reference

Data Structures
class	LinearCharacterContainer
class	LinearPositionContainer
struct	AssemblyInfo
class	LinearIndexer
class	PreparedStatement
class	DatabaseError
class	RowSet
class	Database

Typedefs
typedef boost::shared_ptr< LinearCharacterContainer >	LinearCharacterContainerPtr
typedef boost::shared_ptr< LinearPositionContainer >	LinearPositionContainerPtr
typedef boost::shared_ptr< LinearIndexer >	LinearIndexerPtr
typedef boost::shared_ptr< Database >	DatabasePtr
typedef boost::shared_ptr< PreparedStatement >	PreparedStatementPtr

Functions
void	ExtractValidPositions (const String &entry_name, const String &chain_name, LinearIndexer &indexer, LinearCharacterContainer &atom_seqcontainer, LinearPositionContainer &position_container, ost::seq::SequenceHandle &seq, geom::Vec3List &positions)
void	ExtractTemplateData (const String &entry_name, const String &chain_name, const ost::seq::AlignmentHandle &aln, LinearIndexer &indexer, LinearCharacterContainer &seqres_container, LinearCharacterContainer &atomseq_container, LinearPositionContainer &position_container, std::vector< int > &residue_numbers, geom::Vec3List &ca_positions)
void	SqlConvert (sqlite3_stmt *stmt, int &value, int col=0)
void	SqlConvert (sqlite3_stmt *stmt, String &value, int col=0)
void	SqlConvert (sqlite3_stmt *stmt, sqlite3_int64 &value, int col=0)
template<typename T >
void	SqlConvert (sqlite3_stmt *stmt, T &value)

Typedef Documentation

DatabasePtr

typedef boost::shared_ptr<Database> DatabasePtr

Definition at line 39 of file sqlite_wrap.hh.

LinearCharacterContainerPtr

typedef boost::shared_ptr<LinearCharacterContainer> LinearCharacterContainerPtr

Definition at line 37 of file binary_container.hh.

LinearIndexerPtr

typedef boost::shared_ptr<LinearIndexer> LinearIndexerPtr

Definition at line 35 of file linear_indexer.hh.

LinearPositionContainerPtr

typedef boost::shared_ptr<LinearPositionContainer> LinearPositionContainerPtr

Definition at line 38 of file binary_container.hh.

PreparedStatementPtr

typedef boost::shared_ptr<PreparedStatement> PreparedStatementPtr

Definition at line 42 of file sqlite_wrap.hh.

Function Documentation

ExtractTemplateData()

void ost::db::ExtractTemplateData	(	const String &	entry_name,
		const String &	chain_name,
		const ost::seq::AlignmentHandle &	aln,
		LinearIndexer &	indexer,
		LinearCharacterContainer &	seqres_container,
		LinearCharacterContainer &	atomseq_container,
		LinearPositionContainer &	position_container,
		std::vector< int > &	residue_numbers,
		geom::Vec3List &	ca_positions
	)

ExtractValidPositions()

void ost::db::ExtractValidPositions	(	const String &	entry_name,
		const String &	chain_name,
		LinearIndexer &	indexer,
		LinearCharacterContainer &	atom_seqcontainer,
		LinearPositionContainer &	position_container,
		ost::seq::SequenceHandle &	seq,
		geom::Vec3List &	positions
	)

SqlConvert() [1/4]

void ost::db::SqlConvert ( sqlite3_stmt *  stmt, int &  value, int  col = 0  )

inline

Definition at line 28 of file sqlite_conv.hh.

SqlConvert() [2/4]

void ost::db::SqlConvert ( sqlite3_stmt *  stmt, sqlite3_int64 &  value, int  col = 0  )

inline

Definition at line 38 of file sqlite_conv.hh.

SqlConvert() [3/4]

void ost::db::SqlConvert ( sqlite3_stmt *  stmt, String &  value, int  col = 0  )

inline

Definition at line 33 of file sqlite_conv.hh.

SqlConvert() [4/4]

void ost::db::SqlConvert	(	sqlite3_stmt *	stmt,
		T &	value
	)

Definition at line 44 of file sqlite_conv.hh.