contact_overlap.hh File Reference

#include <boost/shared_ptr.hpp>
#include <ost/mol/entity_view.hh>
#include <ost/img/image.hh>
#include <ost/seq/alignment_handle.hh>
#include "module_config.hh"
#include "similarity_matrix.hh"

Go to the source code of this file.

Data Structures
struct	Contact
struct	LDT
class	DistanceMatrix

Namespaces
	ost
	ost::mol
	ost::mol::alg

Typedefs
typedef std::vector< Contact >	ContactList
typedef boost::shared_ptr< DistanceMatrix >	DistanceMatrixPtr

Enumerations
enum	OverlapMode { OM_RELATIVE , OM_ABSOLUTE }

Functions
ContactList DLLIMPORT	Contacts (const ost::mol::EntityView &ent, Real min_dist, Real max_dist)
void DLLIMPORT	CalcContactNodeDegree (const ContactList &contacts)
Real DLLIMPORT	ContactOverlap (const DistanceMatrixPtr &lhs, const DistanceMatrixPtr &rhs, Real tolerance, OverlapMode mode=OM_RELATIVE, Real dist_limit=1e6)
Real DLLIMPORT	LocalDistanceTest (const ost::mol::EntityView &mdl, const ost::mol::EntityView &ref, Real max_dist, Real tolerance=0.02, bool only_complete=false)
SimilarityMatrix DLLIMPORT	ContactOverlapMap (const ost::seq::AlignmentHandle &target_tpl_aln, Real tolerance, int idx_a, int idx_b)
SimilarityMatrix DLLIMPORT	ContactOverlapMap (const ost::seq::AlignmentHandle &target_tpl_aln, Real tolerance, OverlapMode mode=OM_RELATIVE, Real max_dist=1e6)
SimilarityMatrix DLLIMPORT	ContactOverlapMap (const DistanceMatrix &dmat1, const DistanceMatrix &dmat2, Real tolerance, OverlapMode mode=OM_RELATIVE, Real max_dist=1e6)
void DLLIMPORT	DomainsFromCOM (const SimilarityMatrix &sim, ost::seq::AlignmentHandle aln, Real tolerance, int idx_a=-1, int idx_b=-1)