similarity_matrix.hh

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#ifndef OST_MOL_ALG_SIMILARITY_MATRIX_HH
#define OST_MOL_ALG_SIMILARITY_MATRIX_HH
 
#include <limits>
#include <fstream>
#include <ost/tri_matrix.hh>
#include <ost/img/image.hh>
#include "module_config.hh"
 
namespace ost { namespace mol { namespace alg {
 
// triangular distance matrix
class DLLEXPORT_OST_MOL_ALG SimilarityMatrix : public ost::TriMatrix<Real> {
public:
  SimilarityMatrix(int n, Real def_val=std::numeric_limits<Real>::min()):
    ost::TriMatrix<Real>(n, def_val)
  { }
 
  ost::img::ImageHandle AsImage(bool full=false) const;
 
  static SimilarityMatrix Load(const String& filename);
 
  void Save(const String& filename);
 
};
 
}}}
 
#endif