FastaIOHandler Class Reference

#include <fasta_io_handler.hh>

Inherits SequenceIOHandler, and SequenceIOHandler.

Public Member Functions
virtual void	Import (seq::SequenceList &aln, const boost::filesystem::path &loc)
virtual void	Export (const seq::ConstSequenceList &aln, const boost::filesystem::path &loc) const
virtual void	Import (seq::SequenceList &aln, std::istream &instream)
virtual void	Export (const seq::ConstSequenceList &aln, std::ostream &ostream) const
virtual void	Import (seq::SequenceList &aln, const boost::filesystem::path &loc)
virtual void	Export (const seq::ConstSequenceList &aln, const boost::filesystem::path &loc) const
virtual void	Import (seq::SequenceList &aln, std::istream &instream)
virtual void	Export (const seq::ConstSequenceList &aln, std::ostream &ostream) const
Public Member Functions inherited from SequenceIOHandler
virtual	~SequenceIOHandler ()
virtual	~SequenceIOHandler ()

Static Public Member Functions
static bool	ProvidesImport (const boost::filesystem::path &loc, const String &format="auto")
static bool	ProvidesExport (const boost::filesystem::path &loc, const String &format="auto")
static String	GetFormatName ()
static String	GetFormatDescription ()
static bool	ProvidesImport (const boost::filesystem::path &loc, const String &format="auto")
static bool	ProvidesExport (const boost::filesystem::path &loc, const String &format="auto")
static String	GetFormatName ()
static String	GetFormatDescription ()

Detailed Description

Definition at line 29 of file fasta_io_handler.hh.

Member Function Documentation

Export() [1/4]

virtual void Export ( const seq::ConstSequenceList &  aln, const boost::filesystem::path &  loc  ) const

virtual

Implements SequenceIOHandler.

Export() [2/4]

virtual void Export ( const seq::ConstSequenceList &  aln, const boost::filesystem::path &  loc  ) const

virtual

Implements SequenceIOHandler.

Export() [3/4]

virtual void Export ( const seq::ConstSequenceList &  aln, std::ostream &  ostream  ) const

virtual

Implements SequenceIOHandler.

Export() [4/4]

virtual void Export ( const seq::ConstSequenceList &  aln, std::ostream &  ostream  ) const

virtual

Implements SequenceIOHandler.

GetFormatDescription() [1/2]

static String GetFormatDescription ( )

inlinestatic

Definition at line 48 of file fasta_io_handler.hh.

GetFormatDescription() [2/2]

static String GetFormatDescription ( )

inlinestatic

Definition at line 48 of file fasta_io_handler.hh.

GetFormatName() [1/2]

static String GetFormatName ( )

inlinestatic

Definition at line 47 of file fasta_io_handler.hh.

GetFormatName() [2/2]

static String GetFormatName ( )

inlinestatic

Definition at line 47 of file fasta_io_handler.hh.

Import() [1/4]

virtual void Import ( seq::SequenceList &  aln, const boost::filesystem::path &  loc  )

virtual

Implements SequenceIOHandler.

Import() [2/4]

virtual void Import ( seq::SequenceList &  aln, const boost::filesystem::path &  loc  )

virtual

Implements SequenceIOHandler.

Import() [3/4]

virtual void Import ( seq::SequenceList &  aln, std::istream &  instream  )

virtual

Implements SequenceIOHandler.

Import() [4/4]

virtual void Import ( seq::SequenceList &  aln, std::istream &  instream  )

virtual

Implements SequenceIOHandler.

ProvidesExport() [1/2]

static bool ProvidesExport ( const boost::filesystem::path &  loc, const String &  format = "auto"  )

static

ProvidesExport() [2/2]

static bool ProvidesExport ( const boost::filesystem::path &  loc, const String &  format = "auto"  )

static

ProvidesImport() [1/2]

static bool ProvidesImport ( const boost::filesystem::path &  loc, const String &  format = "auto"  )

static

ProvidesImport() [2/2]

static bool ProvidesImport ( const boost::filesystem::path &  loc, const String &  format = "auto"  )

static

---

The documentation for this class was generated from the following file:

• build-2.9.0-doc/stage/include/ost/io/fasta_io_handler.hh