#include <heuristic.hh>

Inherits Processor.

Public Member Functions
	HeuristicProcessor ()

virtual ProcessorPtr	Copy () const

	HeuristicProcessor (bool bf, bool at, bool cn, bool aa, bool ch, ConopAction zo)

virtual String	ToString () const

Public Member Functions inherited from Processor
DiagnosticsPtr	Process (mol::EntityHandle ent, bool log_diags=true) const

virtual	~Processor ()

	Processor (bool bf, bool at, bool cn, bool aa, bool ch, ConopAction zo)

	Processor ()

void	SetConnect (bool connect)

bool	GetConnect () const

void	SetAssignTorsions (bool flag)

bool	GetAssignTorsions () const

bool	GetConnectAminoAcids () const

void	SetConnectAminoAcids (bool c)

bool	GetConnectHetatm () const

void	SetConnectHetatm (bool c)

bool	GetCheckBondFeasibility () const

void	SetCheckBondFeasibility (bool flag)

ConopAction	GetZeroOccTreatment () const

void	SetZeroOccTreatment (ConopAction action)

Protected Member Functions
void	ProcessUnkResidue (DiagnosticsPtr diags, mol::ResidueHandle res) const

virtual void	DoProcess (DiagnosticsPtr diags, mol::EntityHandle ent) const

Protected Member Functions inherited from Processor
virtual bool	BeginProcessing (DiagnosticsPtr diags, mol::EntityHandle ent) const

virtual bool	EndProcessing (DiagnosticsPtr diags, mol::EntityHandle ent) const

bool	HasUnknownAtoms (mol::ResidueHandle residue, CompoundPtr compound, bool strict_hydrogens) const

void	ReorderAtoms (mol::ResidueHandle residue, CompoundPtr compound, bool fix_element) const

void	FillResidueProps (mol::ResidueHandle residue, CompoundPtr compound) const

void	ConnectAtomsOfResidue (mol::ResidueHandle residue, CompoundPtr compound, bool strict_hydrogens) const

void	ConnectResidues (mol::ResidueHandle residue, mol::ResidueHandle next) const

void	DistanceBasedConnect (mol::AtomHandle atom) const

mol::AtomHandle	LocateAtom (const mol::AtomHandleList &, int ordinal) const

String	OptionsToString () const

Additional Inherited Members
Static Protected Member Functions inherited from Processor
static bool	AreResiduesConsecutive (mol::ResidueHandle a, mol::ResidueHandle b)

Detailed Description

Definition at line 34 of file heuristic.hh.

Constructor & Destructor Documentation

HeuristicProcessor ( )

inline

Definition at line 36 of file heuristic.hh.

inline

Definition at line 44 of file heuristic.hh.

virtual ProcessorPtr Copy ( ) const

inlinevirtual

Implements Processor.

Definition at line 41 of file heuristic.hh.

protectedvirtual

Implements Processor.

protected

virtual String ToString ( ) const

virtual

Implements Processor.

The documentation for this class was generated from the following file: