wrap_parasail.hh File Reference

#include <ost/seq/sequence_handle.hh>
#include <ost/seq/alignment_handle.hh>
#include <ost/seq/alg/subst_weight_matrix.hh>

Go to the source code of this file.

Namespaces
	ost
	ost::seq
	ost::seq::alg

Functions
ost::seq::AlignmentList	ParaLocalAlign (const ost::seq::ConstSequenceHandle &s1, const ost::seq::ConstSequenceHandle &s2, ost::seq::alg::SubstWeightMatrixPtr &subst, int gap_open=-5, int gap_ext=-2)
ost::seq::AlignmentList	ParaGlobalAlign (const ost::seq::ConstSequenceHandle &s1, const ost::seq::ConstSequenceHandle &s2, ost::seq::alg::SubstWeightMatrixPtr &subst, int gap_open=-5, int gap_ext=-2)
ost::seq::AlignmentList	ParaSemiGlobalAlign (const ost::seq::ConstSequenceHandle &s1, const ost::seq::ConstSequenceHandle &s2, ost::seq::alg::SubstWeightMatrixPtr &subst, int gap_open=-5, int gap_ext=-2)
bool	ParasailAvailable ()