Supported Sequence Profile File Formats

HHblits output

Recognized File Extensions

.hhm, .hhm.gz

Format Name

hhm

PSI-BLAST output

ASCII Table (PSSM) output of PSI-BLAST as generated with blastpgp and flag -Q.

Recognized File Extensions

.pssm, .pssm.gz

Format Name

pssm

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Contents

Documentation is available for the following OpenStructure versions:

dev / (Currently viewing 2.9.0) / 2.8 / 2.7 / 2.6 / 2.5 / 2.4 / 2.3.1 / 2.3 / 2.2 / 2.1 / 2.0 / 1.9 / 1.8 / 1.7.1 / 1.7 / 1.6 / 1.5 / 1.4 / 1.3 / 1.2 / 1.11 / 1.10 / 1.1

This documentation is still under heavy development!
If something is missing or if you need the C++ API description in doxygen style, check our old documentation for further information.