OpenStructure: Data Structure Index

OpenStructure

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A

Dist2Mean (ost::seq::alg)

ImageStateNonModAlgorithm (ost::img::image_state)

Nanoscope (ost::io)

SequenceIOHandlerFactoryBase (ost::io)

DistanceMap (ost::seq::alg)

ImageStateNonModVisitor (ost::img::image_state)

Node (ost::mol::impl)

SequenceList (ost::seq)

AdjacencyBitmap (ost::mol::alg)

DistanceMatrix (ost::mol::alg)

ImageStateNonModVisitorBase (ost::img::image_state)

NonModAlgorithm (ost::img)

SequenceListImpl (ost::seq::impl)

AlgorithmBase (ost::img)

Distances (ost::seq::alg)

Index (ost::mol::mm)

NoOpNormalizer (ost::img)

SequenceListIterator (ost::seq::impl)

AlignedColumn (ost::seq)

divide_dimensions (ost::img::physics::detail)

Index (ost::img::image_state)

NormalizeFnc (ost::img)

SerializeHelper (ost::io::detail)

AlignedColumnIterator (ost::seq)

DivideByZeroException (geom)

Index< 1 > (ost::mol::mm)

Normalizer (ost::img::alg)

SerializeHelper< false, T > (ost::io::detail)

AlignedCuboid (geom)

Index< 2 > (ost::mol::mm)

NormalizerImpl (ost::img)

SerializeHelper< true, T > (ost::io::detail)

AlignedPatch (ost.bindings.blast)

Domain (ost::mol::alg)

Index< 3 > (ost::mol::mm)

NotConnectedError (ost::mol)

SerializeWriteHelper (ost::io::detail)

AlignedRegion (ost::seq)

Domains (ost::mol::alg)

Index< 4 > (ost::mol::mm)

NullData (ost::img)

SerializeWriteHelper< false, T > (ost::io::detail)

AlignmentHandle (ost::seq)

DSSPAccessibilityParam (ost::mol::alg)

Index< 5 > (ost::mol::mm)

XMLTestRunnerTest.NullStream (ost.xmlrunner)

SerializeWriteHelper< true, T > (ost::io::detail)

AlignmentOpts (ost::seq::alg)

DX (ost::io)

Index< 6 > (ost::mol::mm)

O

Settings (ost::mol::mm)

AminoAcidSet (ost::conop)

E

Index< 7 > (ost::mol::mm)

ShiftFnc (ost::img::alg)

AminoAcidSetIterator (ost::conop)

IndexBase (ost::mol::mm::impl)

Observable (ost::img)

SimilarityMatrix (ost::mol::alg)

AndOp (ost::img)

EditorBase (ost::mol)

IndexIterator (ost::mol::mm)

Observer (ost::mol::mm)

Simulation (ost::mol::mm)

AnisotropicFilter (ost::img::alg)

Ellipse2 (geom)

IndexIterator (ost::img::image_state)

OligoLDDTScorer (ost.mol.alg.qsscoring)

SinFnc (ost::img::alg)

AssemblyInfo (ost::db)

EllipticPolar (ost::img::alg)

InMemCoordSource (ost::mol)

OpBase (ost::img)

Situs (ost::io)

AtomBase (ost::mol)

EntityBase (ost::mol)

InsDel (ost::seq::alg)

OrOp (ost::img)

Size (ost::img)

AtomGroup (ost::mol::impl)

EntityHandle (ost::mol)

IntegrityError (ost)

OstOptionParser (ost.ost_startup)

SliceFnc (ost::img::alg)

AtomGroupEntry (ost::mol::impl)

EntityImpl (ost::mol::impl)

Interaction (ost::mol::mm)

OutOfRangeException (geom)

SmoothMaskImageBase (ost::img::alg)

AtomHandle (ost::mol)

EntityIOCRDHandler (ost::io)

InvalidAlignment (ost::seq)

OverlapResult (ost::mol::alg)

SpatialDomain (ost::img::image_state)

AtomImpl (ost::mol::impl)

EntityIOHandler (ost::io)

InvalidatedPointer

P

SpatialOrganizer (ost::mol)

AtomProp (ost::mol::impl)

EntityIOHandlerFactory (ost::io)

InvalidExtentException (ost::img)

AtomSpec (ost::conop)

EntityIOHandlerFactoryBase (ost::io)

InvalidHandle (ost)

PagedArray (ost::db)

SphericalMask (ost::img)

AtomView (ost::mol)

EntityIOMAEHandler (ost::io)

InvalidImageHandle (ost::img)

PairSubstWeightMatrix (ost::seq::alg)

Spider (ost::io)

AutoCorrelateFnc (ost::img::alg)

EntityIOMMCIFHandler (ost::io)

InvalidImageStateVisitor (ost::img::image_state)

PairToTupleConverter (ost)

SqrtFnc (ost::img::alg)

B

EntityIOPDBHandler (ost::io)

InvalidObserver (ost::img)

PasteFnc (ost::img::detail)

StarDataItem (ost::io)

EntityIOPQRHandler (ost::io)

InvalidSampling (ost::img)

PDBize (ost::mol::alg)

StarLoopDesc (ost::io)

binary_dispatch_ip (ost::img::image_state::dispatch)

EntityIOSDFHandler (ost::io)

InvalidSequence (ost::seq)

PDBReader (ost::io)

StarParser (ost::io)

binary_dispatch_op (ost::img::image_state::dispatch)

EntityObserver (ost::mol)

InvertedMask (ost::img)

PDBWriter (ost::io)

StatAccumulator (ost::img::alg)

BinaryColExpr (ost.table)

EntityPropertyMapper (ost::mol)

IOException (ost::io)

Peak (ost::img)

StatBase (ost::img::alg)

BinaryDataSink (ost::io)

EntityView (ost::mol)

IOFileAlreadyLoadedException (ost::io)

Phase (ost::img)

StateExtractor (ost::mol::mm)

BinaryDataSource (ost::io)

EntityViewVisitor (ost::mol)

IOManager (ost::io)

PirIOHandler (ost::io)

StatMinMaxBase (ost::img::alg)

BinaryIStream (ost::io)

EntityVisitor (ost::mol)

IOProfile (ost::io)

RasterImage::Pixel (ost::img)

Steep (ost::mol::mm)

BinaryOStream (ost::io)

Error (ost)

IOProfileRegistry (ost::io)

PixelSampling (ost::img)

StereoChemicalAngleViolation (ost::mol::alg)

BlastError (ost.bindings.blast)

ExpFnc (ost::img::alg)

IOProfiles (ost.io)

Plane (geom)

StereoChemicalBondViolation (ost::mol::alg)

BlastHit (ost.bindings.blast)

ExplicitConvoluteFnc (ost::img::alg)

IOUnknownFormatException (ost::io)

StereoChemicalParams (ost::mol::alg)

BlockModifier (ost::mol::mm)

ExplicitCorrelateFnc (ost::img::alg)

PodVector (ost)

StereoChemicalProps (ost::mol::alg)

BondHandle (ost::mol)

Extent (ost::img)

J

Point (ost::img)

StereoChemistryInfo (ost::mol::alg)

BondLengthInfo (ost::mol::alg)

ExtentIterator (ost::img)

PointCloud (geom)

StreamLogSink (ost)

BondSpec (ost::conop)

ExtentMask (ost::img)

PointCloudManager (geom)

StringLogSink (ost)

BondTable (ost::mol)

F

L

pointer_it (ost::mol::impl)

StringOrRegexParam (ost::mol::impl)

BondTableEntry (ost::mol)

PointList (ost::img)

StringRef (ost)

Builder (ost::mol)

FastaIOHandler (ost::io)

lDDTLocalScore (ost::mol::alg)

Polar (ost::img::alg)

SubstWeightMatrix (ost::seq::alg)

BuildingBlock (ost::mol::mm)

FermiHighPassFilter (ost::img::alg)

lDDTScorer (ost::mol::alg)

Polygon2 (geom)

SuperpositionResult (ost::mol::alg)

ButterworthHighPassFilter (ost::img::alg)

FermiLowPassFilter (ost::img::alg)

lDDTSettings (ost::mol::alg)

PolygonMask (ost::img)

SurfaceHandle (ost::mol)

ButterworthLowPassFilter (ost::img::alg)

FFReader (ost::mol::mm)

LDT (ost::mol::alg)

PowerSpectrumFnc (ost::img::alg)

SurfaceImpl (ost::mol::impl)

C

FFTException (ost::img::alg)

Line2 (geom)

PowFnc (ost::img::alg)

SurfaceIOHandler (ost::io)

FFTFnc (ost::img::alg)

Line3 (geom)

PQRReader (ost::io)

SurfaceIOHandlerFactory (ost::io)

CADResult (ost.bindings.cadscore)

FileLogSink (ost)

LinearCharacterContainer (ost::db)

PQRWriter (ost::io)

SurfaceIOHandlerFactoryBase (ost::io)

CalcDensityForceKernel (ost::mol::mm)

FileNotFound (ost.settings)

LinearIndexer (ost::db)

PreparedStatement (ost::db)

SurfaceIOMSMSHandler (ost::io)

Cartesian (ost::img::alg)

FindMemParam (ost::mol::alg)

LinearNormalizer (ost::img::alg)

Processor (ost::conop)

SurfaceTri (ost::mol)

FixedString (ost)

LinearPositionContainer (ost::db)

SurfaceVertex (ost::mol)

ChainBase (ost::mol)

Forcefield (ost::mol::mm)

LinearRangeNormalizer (ost::img::alg)

ProfileColumn (ost::seq)

SystemCreator (ost::mol::mm)

ChainHandle (ost::mol)

FormattedLine (ost::io)

LineAverageBase (ost::img::alg)

ProfileDB (ost::seq)

T

ChainImpl (ost::mol::impl)

FractionalShift (ost::img::alg)

LineIterator (ost::img::alg)

ProfileHandle (ost::seq)

ChainView (ost::mol)

FragmentImpl (ost::mol::impl)

LineSlice (ost::io)

ProfileIOHandler (ost::io)

Table (ost.table)

CHARMMData (ost::mol::mm)

FrequencyDomain (ost::img::image_state)

LocalSigmaThresholdBase (ost::img::alg)

ProfileIOHandlerFactory (ost::io)

TableCol (ost.table)

Checker (ost::conop)

G

Log10Fnc (ost::img::alg)

ProfileIOHandlerFactoryBase (ost::io)

TableRow (ost.table)

ChemClass (ost::mol)

LogFnc (ost::img::alg)

Progress (ost::img)

TableSelector (ost.table_selector)

ChemdictParser (ost::io)

GaussianFilterBase (ost::img::alg)

Logger (ost)

PromodIOHandler (ost::io)

TanFnc (ost::img::alg)

ChemType (ost::mol)

GaussianGradientMagnitudeFilterBase (ost::img::alg)

LogicOPNode (ost::mol::impl)

Prop (ost::mol)

TempDirWithFiles (ost.bindings.utils)

GaussianHighPassFilter (ost::img::alg)

LogNormalizer (ost::img::alg)

PropertyError (ost::mol)

TerminiConstructor (ost::mol::mm)

CircleMask (ost::img)

GaussianLaplacianFilterBase (ost::img::alg)

LogRangeNormalizer (ost::img::alg)

PssmIOHandler (ost::io)

TerminiExceptions (ost::mol::mm)

GaussianLowPassFilter (ost::img::alg)

ClashEvent (ost::mol::alg)

GDTResult (ost.bindings.lga)

LowPassFilter (ost::img::alg)

Q

tiff_warning_handler_wrapper (ost::io::detail)

ClashingDistances (ost::mol::alg)

GenericPropContainer (ost)

LPadded (ost::io::fmt)

TMAlignResult (ost::bindings)

ClashingInfo (ost::mol::alg)

GenericPropContainerImpl (ost)

LPaddedFloat (ost::io::fmt)

QSscoreEntity (ost.mol.alg.qsscoring)

TMScoreResult (ost.bindings.tmtools)

ClustalIOHandler (ost::io)

GenericPropError (ost)

LPaddedInt (ost::io::fmt)

QSscoreError (ost.mol.alg.qsscoring)

Topology (ost::mol::mm)

cluster (ost.bindings.kclust)

GenProp (ost::mol::impl)

M

QSscorer (ost.mol.alg.qsscoring)

TopologyCreator (ost::mol::mm)

complexint16 (ost::io::detail)

GeomException (geom)

quantity (ost::img::physics::detail)

TorsionHandle (ost::mol)

complexint32 (ost::io::detail)

GromacsBlockModifier (ost::mol::mm)

MAEReader (ost::io)

Quat (geom)

TorsionImpl (ost::mol::impl)

complexint8 (ost::io::detail)

GromacsData (ost::mol::mm)

MapIODatHandler (ost::io)

Query (ost::mol)

TrajObserver (ost::mol::mm)

CompositeMask (ost::img)

GromacsHydrogenConstructor (ost::mol::mm)

MapIODm3Handler (ost::io)

QueryError (ost::mol)

TrajWriter (ost::mol::mm)

Compound (ost::conop)

GromacsPositionRuleEvaluator (ost::mol::mm)

MapIODxHandler (ost::io)

QueryErrorDesc (ost::mol)

Transform (geom)

CompoundLib (ost::conop)

H

MapIOHandler (ost::io)

QueryFlag (ost::mol)

Transformation (ost::img::alg)

CompoundLibBase (ost::conop)

MapIOHandlerFactory (ost::io)

QueryImpl (ost::mol::impl)

TransformFnc (ost::img::alg)

ConjFnc (ost::img::alg)

HalfFrequencyDomain (ost::img::image_state)

MapIOHandlerFactoryBase (ost::io)

QueryLexer (ost::mol::impl)

Translate (ost::img::alg)

ConnectorImpl (ost::mol::impl)

HBond (ost.mol.alg.hbond)

MapIOIPLHandler (ost::io)

QueryState (ost::mol)

TransmissionToODNormalizer (ost::img::alg)

Conopology (ost::conop)

HBond (ost.bindings.hbplus)

MapIOJpkHandler (ost::io)

QueryToken (ost::mol::impl)

TriMatrix (ost)

const_circular_iter

HBondableAtoms (ost.mol.alg.hbond)

MapIOMrcHandler (ost::io)

QueryViewWrapper (ost::mol)

types

ConstData (ost::img)

HBondAcceptor (ost.mol.alg.hbond)

MapIONanoscopeHandler (ost::io)

R

types

ConstGenericPropContainer (ost)

HBondDonor (ost.mol.alg.hbond)

MapIOPngHandler (ost::io)

U

ConstImageHandle (ost::img)

HeuristicBlockModifier (ost::mol::mm)

MapIOSitusHandler (ost::io)

RandomizeFnc (ost::img::alg)

ConstModIPAlgorithm (ost::img)

HeuristicHydrogenConstructor (ost::mol::mm)

MapIOSpiHandler (ost::io)

Range (ost)

unary_dispatch_ip (ost::img::image_state::dispatch)

ConstModOPAlgorithm (ost::img)

HeuristicProcessor (ost::conop)

MapIOTiffHandler (ost::io)

RangeHandler (ost::img)

unary_dispatch_op (ost::img::image_state::dispatch)

ConstSequenceHandle (ost::seq)

HHblits (ost.bindings.hhblits)

MappedLDDTScorer (ost.mol.alg.qsscoring)

RasterImage (ost::img)

UndefinedImageFormat (ost::io)

ConstSequenceList (ost::seq)

HHblitsHeader (ost.bindings.hhblits)

MaskBase (ost::img)

Rectangle2 (geom)

UniqueAtomIdentifier (ost::mol::alg)

Contact (ost::mol::alg)

HHblitsHit (ost.bindings.hhblits)

MaskImageBase (ost::img::alg)

ReferenceCalcDensityForceKernel (ost::mol::mm)

Units (ost)

ContactPredictionScoreResult (ost::seq::alg)

HhmIOHandler (ost::io)

MaskVisitor (ost::img)

ReferenceDensityKernelFactory (ost::mol::mm)

V

ContactWeightMatrix (ost::seq::alg)

HighestPeakSearch3DBase (ost::img::alg)

Mat2 (geom)

RefMode (ost::seq::alg)

Convert (ost::io)

HighPassFilter (ost::img::alg)

Mat3 (geom)

RemoteRepository (ost.io.remote)

ValueHolder (ost::img::image_state)

CoordFrame (ost::mol)

HistogramBase (ost::img::alg)

Mat4 (geom)

ResidueBase (ost::mol)

VarianceMap (ost::seq::alg)

CoordGroupHandle (ost::mol)

HistogramError (ost::img::alg)

MeanSquareMinimizer (ost::mol::alg)

ResidueHandle (ost::mol)

Vec2 (geom)

CoordSource (ost::mol)

HydrogenConstructor (ost::mol::mm)

MinimalCompoundLib (ost::conop)

ResidueImpl (ost::mol::impl)

Vec3 (geom)

CosFnc (ost::img::alg)

Hyperbola2 (geom)

MirrorFnc (ost::img::alg)

ResidueNames (ost::mol::mm)

Vec3List (geom)

CRDReader (ost::io)

I

MMAlignResult (ost.bindings.tmtools)

ResidueView (ost::mol)

Vec4 (geom)

CRDWriter (ost::io)

MMCifInfo (ost::io)

ResNum (ost::mol)

VectorAdditions (geom)

CrossCorrelate (ost::img::alg)

iAlignResult (ost.bindings.ialign)

MMCifInfoBioUnit (ost::io)

RingFinder (ost::conop)

VectorToListConverter (ost)

ICSEditor (ost::mol)

MMCifInfoCitation (ost::io)

Rotate2D (ost::img::alg)

ViewAddFlag (ost::mol)

CuboidAxis (geom)

ImageFormatBase (ost::io)

MMCifInfoObsolete (ost::io)

Rotate2D90 (ost::img::alg)

W

D

ImageHandle (ost::img)

MMCifInfoRevisions (ost::io)

Rotation3 (geom)

ImageList (ost::img)

MMCifInfoStructDetails (ost::io)

RowSet (ost::db)

WithinParam (ost::mol::impl)

ImageStateBase (ost::img::image_state)

MMCifInfoStructRef (ost::io)

RPadded (ost::io::fmt)

X

Data (ost::img)

ImageStateConstModIPAlgorithm (ost::img::image_state)

MMCifInfoStructRefSeq (ost::io)

RuleBasedProcessor (ost::conop)

Database (ost::db)

ImageStateConstModIPVisitor (ost::img::image_state)

MMCifInfoStructRefSeqDif (ost::io)

S

XCSEditor (ost::mol)

DatabaseError (ost::db)

ImageStateConstModIPVisitorBase (ost::img::image_state)

MMCifInfoTransOp (ost::io)

XMLTestRunner (ost.xmlrunner)

DataObserver (ost::img)

ImageStateConstModOPAlgorithm (ost::img::image_state)

MMCifReader (ost::io)

Scalar (ost::img::physics)

XMLTestRunnerTest (ost.xmlrunner)

Date (ost::conop)

ImageStateConstModOPVisitor (ost::img::image_state)

MMPreprocessor (ost::mol::mm)

Scale (ost::img::alg)

XorOp (ost::img)

DensityForce (ost::mol::mm)

ImageStateConstModOPVisitorBase (ost::img::image_state)

Modeller (ost::mol::mm)

SDFReader (ost::io)

_

DensityForceImpl (ost::mol::mm)

ImageStateImpl (ost::img::image_state)

ModelRepository (ost.io.repository)

SDFWriter (ost::io)

ImageStateModIPAlgorithm (ost::img::image_state)

ModIPAlgorithm (ost::img)

SecStructure (ost::mol)

_CachedRMSD (ost.mol.alg.qsscoring)

DF3MapIOHandler (ost::io)

ImageStateModIPVisitor (ost::img::image_state)

ModOPAlgorithm (ost::img)

SecStructureSegment (ost::mol::alg)

_fake_std_streams (ost.xmlrunner)

DFT (ost::img::alg)

ImageStateModIPVisitorBase (ost::img::image_state)

MolckSettings (ost::mol::alg)

SelItem (ost::mol::impl)

_TestInfo (ost.xmlrunner)

Diag (ost::conop)

ImageStateModOPAlgorithm (ost::img::image_state)

SelNode (ost::mol::impl)

_XMLTestResult (ost.xmlrunner)

DiagError (ost::conop)

ImageStateModOPVisitor (ost::img::image_state)

MsmsProcessError (ost.bindings.msms)

SelStmt (ost::mol::impl)

Diagnostics (ost::conop)

ImageStateModOPVisitorBase (ost::img::image_state)

MultiLogSink (ost)

SequenceHandle (ost::seq)

Dihedral (ost::mol::impl)

ImageStateMorphAlgorithm (ost::img::image_state)

multiply_dimensions (ost::img::physics::detail)

SequenceImpl (ost::seq::impl)

DiscreteShrinkFnc (ost::img::alg)

ImageStateMorphVisitor (ost::img::image_state)

N

SequenceIOHandler (ost::io)

DispatchException (ost::img::image_state)

ImageStateMorphVisitorBase (ost::img::image_state)

SequenceIOHandlerFactory (ost::io)

NACCESSAccessibilityParam (ost::mol::alg)

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