- _ -

• __all__ : ost , ost::bindings::hhblits , ost::mol::alg::hbond , ost::mol::alg::qsscoring , ost::seq::alg::mat , ost::mol::mm::antechamber , ost::conop::cleanup
• __version__ : ost::xmlrunner
• _CreateAlignment : ost::seq
• _ostrc : ost::ost_startup

- a -

• action_path : ost::ost_startup

- b -

• BLOSUM100 : ost::seq::alg::mat
• BLOSUM45 : ost::seq::alg::mat
• BLOSUM62 : ost::seq::alg::mat
• BLOSUM80 : ost::seq::alg::mat

- d -

• DEFAULT_SLOT : ost::io::jpk_tags

- e -

• EPSILON : geom

- g -

• GRID_REFLECT : ost::io::jpk_tags
• GRID_U_LENGTH : ost::io::jpk_tags
• GRID_V_LENGTH : ost::io::jpk_tags
• gui_mode : ost::ost_startup

- h -

• HistoryFile : ost::ost_startup
• home : ost::ost_startup

- l -

• LIGAND_CHAIN_NAME : ost::mol::alg

- p -

• POLYPEPTIDE_CHAIN_NAMES : ost::mol::alg
• processor : ost::io
• profiles : ost::io

- q -

• quack_mode : ost::io

- r -

• RAW_CONTACT_WEIGHT_MATRIX : ost::seq::alg
• RAW_CONTACT_WEIGHT_MATRIX_RES_LIST : ost::seq::alg
• RAW_PAIR_SUBST_WEIGHT_MATRIX : ost::seq::alg
• RAW_PAIR_SUBST_WEIGHT_MATRIX_RES_LIST : ost::seq::alg
• REMOTE_REPOSITORIES : ost::io::remote

- s -

• script : ost::ost_startup
• SLOT_COUNT : ost::io::jpk_tags
• STANDARD_AMINOACIDS : ost::conop
• sys_argv_backup : ost::ost_startup

- u -

• usage : ost::ost_startup

- w -

• WATER_CHAIN_NAME : ost::mol::alg

- x -

• X : geom::Axis

- y -

• Y : geom::Axis

- z -

• Z : geom::Axis