AlignmentViewObject Class Reference

#include <alignment_view_object.hh>

Inherits SequenceViewObject.

Public Member Functions
	AlignmentViewObject (const seq::AlignmentHandle &alignment, QObject *parent=0)
QVariant	GetData (int row, int column, int role)
const seq::AlignmentHandle &	GetAlignment ()
void	SetDisplayMode (const QString &mode)
Public Member Functions inherited from SequenceViewObject
	SequenceViewObject (seq::SequenceList &sequences, const QList< QString > &names, QObject *parent=0)
	SequenceViewObject (seq::SequenceHandle &sequence, const QString &name, QObject *parent=0)
	SequenceViewObject (mol::ChainView &chain, const QString &name, QObject *parent=0)
	SequenceViewObject (const gfx::EntityP &entity, QObject *parent=0)
	SequenceViewObject (QObject *parent=0)
void	Init ()
void	AddSequence (seq::ConstSequenceHandle sequence, const QString &name=QString())
void	AddChain (mol::ChainView &chain, const QString &name=QString())
void	AttachGfxObject (gfx::EntityP &ent)
gfx::EntityP &	GetGfxObject ()
QMap< int, QList< int > >	GetIndexesForView (const mol::EntityView &view)
QMap< int, QList< int > >	GetIndexesForSubject (const QString &subject, const QString &sequence_name=QString())
Public Member Functions inherited from BaseViewObject
	BaseViewObject (QObject *parent=0)
void	InsertRow (int pos, BaseRow *row)
void	RemoveRow (BaseRow *row)
BaseRow *	GetRow (int pos)
int	GetRowCount ()
int	GetMaxColumnCount () const
virtual void	SetSelection (int row, const QSet< int > &added, const QSet< int > &removed)
virtual bool	SetData (int row, int column, const QVariant &value, int role)
virtual Qt::ItemFlags	Flags (int row, int column) const
virtual const QStringList &	GetDisplayModes ()
virtual const QString &	GetCurrentDisplayMode ()
void	DoubleClicked (int row, int column)
void	ZoomIn ()
void	ZoomOut ()

Additional Inherited Members
Static Protected Attributes inherited from SequenceViewObject
static const QString	properties_mode
static const QString	secondary_structure_mode
static AlignPropertiesPainter *	align_properties_painter
static ConservationPainter *	conservation_painter
static BackgroundPainter *	background_painter
static SeqSecStrPainter *	seq_secondary_structure_painter
static SeqSelectionPainter *	seq_selection_painter
static SeqTextPainter *	seq_text_painter

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Detailed Description

Definition at line 34 of file alignment_view_object.hh.

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Constructor & Destructor Documentation

AlignmentViewObject	(	const seq::AlignmentHandle &	alignment,
		QObject *	parent = 0
	)

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Member Function Documentation

const seq::AlignmentHandle& GetAlignment

(

)

QVariant GetData ( int  row, int  column, int  role  )

virtual

Reimplemented from BaseViewObject.

void SetDisplayMode ( const QString &  mode )

virtual

Reimplemented from SequenceViewObject.

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The documentation for this class was generated from the following file:

• stage/include/ost/gui/sequence_viewer/alignment_view_object.hh