SequenceViewObject Class Reference

#include <sequence_view_object.hh>

Inherits BaseViewObject.

Inherited by AlignmentViewObject.

Public Member Functions
	SequenceViewObject (seq::SequenceList &sequences, const QList< QString > &names, QObject *parent=0)
	SequenceViewObject (seq::SequenceHandle &sequence, const QString &name, QObject *parent=0)
	SequenceViewObject (mol::ChainView &chain, const QString &name, QObject *parent=0)
	SequenceViewObject (const gfx::EntityP &entity, QObject *parent=0)
	SequenceViewObject (QObject *parent=0)
void	Init ()
void	AddSequence (seq::ConstSequenceHandle sequence, const QString &name=QString())
void	AddChain (mol::ChainView &chain, const QString &name=QString())
void	AttachGfxObject (gfx::EntityP &ent)
gfx::EntityP &	GetGfxObject ()
virtual void	SetDisplayMode (const QString &mode)
QMap< int, QList< int > >	GetIndexesForView (const mol::EntityView &view)
QMap< int, QList< int > >	GetIndexesForSubject (const QString &subject, const QString &sequence_name=QString())
Public Member Functions inherited from BaseViewObject
	BaseViewObject (QObject *parent=0)
void	InsertRow (int pos, BaseRow *row)
void	RemoveRow (BaseRow *row)
BaseRow *	GetRow (int pos)
int	GetRowCount ()
int	GetMaxColumnCount () const
virtual void	SetSelection (int row, const QSet< int > &added, const QSet< int > &removed)
virtual QVariant	GetData (int row, int column, int role)
virtual bool	SetData (int row, int column, const QVariant &value, int role)
virtual Qt::ItemFlags	Flags (int row, int column) const
virtual const QStringList &	GetDisplayModes ()
virtual const QString &	GetCurrentDisplayMode ()
void	DoubleClicked (int row, int column)
void	ZoomIn ()
void	ZoomOut ()

Static Protected Attributes
static const QString	properties_mode
static const QString	secondary_structure_mode
static AlignPropertiesPainter *	align_properties_painter
static ConservationPainter *	conservation_painter
static BackgroundPainter *	background_painter
static SeqSecStrPainter *	seq_secondary_structure_painter
static SeqSelectionPainter *	seq_selection_painter
static SeqTextPainter *	seq_text_painter

Additional Inherited Members
Protected Member Functions inherited from BaseViewObject
virtual void	AddDisplayMode (const QString &mode)
Protected Attributes inherited from BaseViewObject
QList< BaseRow * >	rows_
QString	current_display_mode_
QStringList	display_modes_

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Detailed Description

Definition at line 45 of file sequence_view_object.hh.

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Constructor & Destructor Documentation

SequenceViewObject	(	seq::SequenceList &	sequences,
		const QList< QString > &	names,
		QObject *	parent = 0
	)

SequenceViewObject	(	seq::SequenceHandle &	sequence,
		const QString &	name,
		QObject *	parent = 0
	)

SequenceViewObject	(	mol::ChainView &	chain,
		const QString &	name,
		QObject *	parent = 0
	)

SequenceViewObject	(	const gfx::EntityP &	entity,
		QObject *	parent = 0
	)

SequenceViewObject

(

QObject *

parent = 0

)

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Member Function Documentation

void AddChain	(	mol::ChainView &	chain,
		const QString &	name = QString()
	)

void AddSequence	(	seq::ConstSequenceHandle	sequence,
		const QString &	name = QString()
	)

void AttachGfxObject

(

gfx::EntityP &

ent

)

gfx::EntityP& GetGfxObject

(

)

QMap<int, QList<int> > GetIndexesForSubject	(	const QString &	subject,
		const QString &	sequence_name = QString()
	)

QMap<int, QList<int> > GetIndexesForView

(

const mol::EntityView &

view

)

void Init

(

)

virtual void SetDisplayMode ( const QString &  mode )

virtual

Reimplemented from BaseViewObject.

Reimplemented in AlignmentViewObject.

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Field Documentation

AlignPropertiesPainter* align_properties_painter

staticprotected

Definition at line 73 of file sequence_view_object.hh.

BackgroundPainter* background_painter

staticprotected

Definition at line 75 of file sequence_view_object.hh.

ConservationPainter* conservation_painter

staticprotected

Definition at line 74 of file sequence_view_object.hh.

const QString properties_mode

staticprotected

Definition at line 70 of file sequence_view_object.hh.

const QString secondary_structure_mode

staticprotected

Definition at line 71 of file sequence_view_object.hh.

SeqSecStrPainter* seq_secondary_structure_painter

staticprotected

Definition at line 76 of file sequence_view_object.hh.

SeqSelectionPainter* seq_selection_painter

staticprotected

Definition at line 77 of file sequence_view_object.hh.

SeqTextPainter* seq_text_painter

staticprotected

Definition at line 78 of file sequence_view_object.hh.

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The documentation for this class was generated from the following file:

• stage/include/ost/gui/sequence_viewer/sequence_view_object.hh