- a -

• Add() : AminoAcidSet , InfoSet , StarLoopDesc , PDBize , StarLoopDesc , SpatialOrganizer< ITEM, VEC >
• add_scalar() : ImageStateImpl< T, D >
• AddAlignedSeq() : MMCifInfoStructRef
• AddAllInclusiveBonds() : EntityView
• AddAltAtomPos() : EditorBase , ResidueImpl
• AddAtom() : EntityView , ResidueView , Compound , Diag , ChainView
• AddAtomInternal() : EntityView
• AddAuthorsToCitation() : MMCifInfo
• AddBioUnit() : MMCifInfo
• AddBond() : Compound , AtomView , EntityView
• AddCallback() : Progress
• AddChain() : EntityView , Diag , MMCifInfoBioUnit
• AddCitation() : MMCifInfo
• AddCol() : Table
• AddCompound() : CompoundLib
• AddDefault() : InfoHandle
• AddDiag() : Diagnostics
• AddDif() : MMCifInfoStructRefSeq
• addError() : _XMLTestResult
• addFailure() : _XMLTestResult
• AddFrame() : CoordGroupHandle , CoordSource , InMemCoordSource
• AddFrames() : CoordGroupHandle
• AddInt() : Diag
• AddMMCifPDBChainTr() : MMCifInfo
• AddNode() : Polygon2 , PolygonMask
• AddOperation() : MMCifInfo
• AddOperations() : MMCifInfoBioUnit
• AddPDBMMCifChainTr() : MMCifInfo
• AddPoint() : PointCloud
• AddPointCloud() : PointCloudManager
• AddResidue() : Diag , ChainView , EntityView
• AddRevision() : MMCifInfoRevisions , MMCifInfo , MMCifInfoRevisions , MMCifInfo
• AddRow() : Table
• AddSecondaryConnector() : AtomImpl
• AddSequence() : AlignmentHandle , SequenceListImpl , ConstSequenceList , SequenceList
• AddSink() : MultiLogSink
• AddString() : Diag
• AddTorsion() : EditorBase , EntityImpl , ResidueImpl
• AddTri() : SurfaceImpl , SurfaceHandle
• AddVertex() : SurfaceImpl , SurfaceHandle
• AdjustPhaseOrigin() : ImageStateImpl< T, D >
• AdvanceProgress() : Progress
• AlgorithmBase() : AlgorithmBase
• AlignedColumn() : AlignedColumn
• AlignedColumnIterator() : AlignedColumnIterator
• AlignedCuboid() : AlignedCuboid
• AlignedRegion() : AlignedRegion
• AlignmentHandle() : AlignmentHandle
• AlignmentOpts() : AlignmentOpts
• AminoAcidSet() : AminoAcidSet
• AminoAcidSetIterator() : AminoAcidSetIterator
• AnisotropicFilter() : AnisotropicFilter
• Append() : SequenceImpl , SequenceHandle
• AppendResidue() : EditorBase , ChainImpl
• Apply() : ImageHandle , EntityImpl , ConstImageHandle , EntityView , ConstImageHandle , ImageList , ChainView , ImageList , ImageStateBase , InfoHandle , ImageStateBase , PolygonMask , ImageStateImpl< T, D > , InvertedMask , MaskBase , NullData , SphericalMask , InfoGroup , InfoHandle , AtomHandle , AtomView , BondHandle , ChainHandle , ChainView , EntityHandle , EntityView , AtomImpl , ChainImpl , ConnectorImpl , ResidueImpl , TorsionImpl , ImageHandle , ResidueHandle , ResidueView , Data , TorsionHandle , Rotation3 , Transform , Transformation , CircleMask , CompositeMask , ConstData , ExtentMask , ImageHandle
• ApplyAxisRotation() : Transform
• ApplyInverse() : Transform
• ApplyIP() : ImageList , ImageStateImpl< T, D > , ConstData , NullData , Data , ImageStateBase , ImageList , ImageHandle , ConstImageHandle , ImageList , ImageStateBase , ImageStateImpl< T, D > , ImageHandle , ImageStateImpl< T, D >
• ApplyTransform() : EntityImpl , CoordGroupHandle , CoordSource , XCSEditor
• ApplyXAxisRotation() : Transform
• ApplyXAxisTranslation() : Transform
• ApplyYAxisRotation() : Transform
• ApplyYAxisTranslation() : Transform
• ApplyZAxisRotation() : Transform
• ApplyZAxisTranslation() : Transform
• AreResiduesConsecutive() : Processor
• As() : ImageFormatBase
• AsBool() : InfoItem
• AsFloat() : InfoItem
• AsInt() : InfoItem
• Assign() : GenericPropContainerImpl
• AssignSecondaryStructure() : ChainHandle , ChainImpl
• AssignSecStructure() : MMCifReader
• AsString() : ResNum
• AsVector() : InfoItem
• At() : Mat3 , Vec2 , Vec4 , Vec3 , Point , Plane , Mat4 , Point , Ellipse2 , Vec3 , Hyperbola2 , Mat3 , Vec4 , Mat2 , Line3 , Vec2 , Line2 , Mat2
• AtAngle() : Ellipse2
• AtEnd() : ExtentIterator , IndexIterator , LineIterator , RowSet< R >
• Atom() : Builder
• AtomBase() : AtomBase
• AtomGroupEntry() : AtomGroupEntry
• AtomHandle() : AtomHandle
• AtomImpl() : AtomImpl
• AtomProp() : AtomProp
• AtomSpec() : AtomSpec
• AtomView() : AtomView
• AtStart() : ExtentIterator , IndexIterator
• Attach() : SurfaceImpl , ConstData , ImageHandle , SurfaceHandle , Observable , SurfaceImpl , NullData , ConstImageHandle , SurfaceHandle
• AttachObserver() : EntityHandle , EntityImpl
• AttachView() : SequenceImpl , SequenceHandle , AlignmentHandle , SequenceImpl , AlignmentHandle , SequenceHandle
• AutoCorrelateFnc() : AutoCorrelateFnc