AminoAcidSet Class Reference

Amino acid bit set. More...

Public Types
typedef AminoAcidSetIterator	Iterator
Public Member Functions
	AminoAcidSet ()
void	Add (AminoAcid amino_acid)
void	Remove (AminoAcid amino_acid)
bool	Contains (AminoAcid amino_acid) const
bool	Empty () const
Iterator	Begin () const
Iterator	End () const
bool	operator== (const AminoAcidSet &rhs) const
bool	operator!= (const AminoAcidSet &rhs) const
template<typename DS >
void	Serialize (DS &ds)
Static Public Member Functions
static AminoAcidSet	CreatePolarSet ()
static AminoAcidSet	CreateAromaticSet ()
static AminoAcidSet	CreateApolarSet ()
static AminoAcidSet	CreateSet (AminoAcid aa)
static std::vector< AminoAcidSet >	CreateCompleteSet ()
static std::vector< AminoAcidSet >	CreateThreeStateSet ()
static std::vector< AminoAcidSet >	CreatePseudoSet ()

Detailed Description

Amino acid bit set.

Definition at line 98 of file amino_acids.hh.

Definition at line 100 of file amino_acids.hh.

AminoAcidSet ( )

void Add ( AminoAcid amino_acid )

add another amino acid

Iterator Begin ( ) const

iterator pointing to the beginning of the amino acid set

 for (AminoAcidSet::iterator i=aa_set.Begin(), e=aa_set.End(); i!=e; ++i) {
   . . .
 }

will iterate over all the amino acids present in the set.

bool Contains ( AminoAcid amino_acid ) const

whether the set contains a given amino acid

static AminoAcidSet CreateApolarSet ( ) [static]

static AminoAcidSet CreateAromaticSet ( ) [static]

static std::vector<AminoAcidSet> CreateCompleteSet ( ) [static]

static AminoAcidSet CreatePolarSet ( ) [static]

static std::vector<AminoAcidSet> CreatePseudoSet ( ) [static]

static AminoAcidSet CreateSet ( AminoAcid aa ) [static]

static std::vector<AminoAcidSet> CreateThreeStateSet ( ) [static]

bool Empty ( ) const

whether the set is empty

Iterator End ( ) const

iterator pointing to the end of the amino acids.

bool operator!= ( const AminoAcidSet & rhs ) const

bool operator== ( const AminoAcidSet & rhs ) const

void Remove ( AminoAcid amino_acid )

void Serialize ( DS & ds ) [inline]

Definition at line 147 of file amino_acids.hh.

The documentation for this class was generated from the following file: