AlignedPatch Class Reference

Public Member Functions
def	__init__
Data Fields
	aln
	bit_score
	score
	evalue
	seqid

Detailed Description

An aligned patch, aka. HSP

.. attribute:: aln

  The local alignment. Sequence offset of both sequences in the alignment are
  set to the starting position in the query and target sequence, respectively.

  :type: :class:`~ost.seq.AlignmentHandle`

.. attribute:: bit_score

  The bit score of the HSP

.. attribute:: score

  The score of the HSP

.. attribute:: evalue

  The E-value of the HSP

.. attribute:: seqid

  The sequence identity of the HSP

Definition at line 8 of file blast.py.