AlignedPatch Class Reference

Public Member Functions

def __init__

Data Fields

 aln
 bit_score
 score
 evalue
 seqid

Detailed Description

An aligned patch, aka. HSP

.. attribute:: aln

  The local alignment. Sequence offset of both sequences in the alignment are
  set to the starting position in the query and target sequence, respectively.

  :type: :class:`~ost.seq.AlignmentHandle`

.. attribute:: bit_score

  The bit score of the HSP

.. attribute:: score

  The score of the HSP

.. attribute:: evalue

  The E-value of the HSP

.. attribute:: seqid

  The sequence identity of the HSP

Definition at line 8 of file blast.py.


Member Function Documentation

def __init__ (   self,
  aln,
  bit_score,
  score,
  evalue,
  seqid 
)

Definition at line 35 of file blast.py.


Field Documentation

aln

Definition at line 36 of file blast.py.

Definition at line 37 of file blast.py.

Definition at line 39 of file blast.py.

Definition at line 38 of file blast.py.

Definition at line 40 of file blast.py.


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