- _ -

• __all__ : ost , ost::bindings::hhblits2 , ost::conop::cleanup , ost::mol::alg::contact_score , ost::mol::alg::hbond , ost::gui::table , ost::mol::alg::ligand_scoring , ost::mol::alg::qsscore , ost::bindings::hhblits3 , ost::gui::trajectory_viewer , ost::mol::alg::qsscoring , ost::mol::mm::antechamber , ost::mol::alg::chain_mapping , ost::seq::alg::mat
• __version__ : ost::xmlrunner , ost
• _CreateAlignment : ost::seq
• _img_present : ost::gui::scene::uniform_color_widget , ost::gui::dng::init , ost::gui::scene::scene_selection_helper , ost::gui::scene::map_level_widget , ost::gui::scene::wireframe_widget , ost::gui::scene::render_options_widget , ost::gui::scene::color_options_widget
• _ostrc : ost::gui::dng::init , ost::ost_startup

- a -

• action : ost::gui
• action_path : ost::ost_startup

- b -

• BLACK : ost::gfx
• BLOSUM100 : ost::seq::alg::mat
• BLOSUM45 : ost::seq::alg::mat
• BLOSUM62 : ost::seq::alg::mat
• BLOSUM80 : ost::seq::alg::mat
• BLUE : ost::gfx

- c -

• compound_lib : ost::gui::dng::init
• CYAN : ost::gfx

- d -

• DARKBLUE : ost::gfx
• DARKCYAN : ost::gfx
• DARKGREEN : ost::gfx
• DARKMAGENTA : ost::gfx
• DARKORANGE : ost::gfx
• DARKPURPLE : ost::gfx
• DARKRED : ost::gfx
• DARKYELLOW : ost::gfx
• DEFAULT_SLOT : ost::io::jpk_tags

- e -

• EPSILON : geom

- g -

• GREEN : ost::gfx
• GREY : ost::gfx
• GRID_REFLECT : ost::io::jpk_tags
• GRID_U_LENGTH : ost::io::jpk_tags
• GRID_V_LENGTH : ost::io::jpk_tags
• gui_mode : ost::ost_startup , ost::gui::gosty_startup

- h -

• hhblits_version : ost::bindings::hhblits
• hhblits_version_string : ost::bindings::hhblits
• HistoryFile : ost::ost_startup
• home : ost::gui::dng::init , ost::ost_startup

- i -

• IDENTITY : ost::seq::alg::mat

- l -

• LIGAND_CHAIN_NAME : ost::mol::alg
• LIGHTBLUE : ost::gfx
• LIGHTCYAN : ost::gfx
• LIGHTGREEN : ost::gfx
• LIGHTMAGENTA : ost::gfx
• LIGHTORANGE : ost::gfx
• LIGHTPURPLE : ost::gfx
• LIGHTRED : ost::gfx
• LIGHTYELLOW : ost::gfx
• LOGO_PATH : ost::gui::init_splash

- m -

• MAGENTA : ost::gfx
• MATCH : ost::seq::alg::mat

- n -

• NUC44 : ost::seq::alg::mat

- o -

• OMF_VERSION : ost::io
• ORANGE : ost::gfx

- p -

• POLYPEPTIDE_CHAIN_NAMES : ost::mol::alg
• predicate : ost::gui
• profiles : ost::io
• PURPLE : ost::gfx

- r -

• RAW_CONTACT_WEIGHT_MATRIX : ost::seq::alg
• RAW_CONTACT_WEIGHT_MATRIX_RES_LIST : ost::seq::alg
• RAW_PAIR_SUBST_WEIGHT_MATRIX : ost::seq::alg
• RAW_PAIR_SUBST_WEIGHT_MATRIX_RES_LIST : ost::seq::alg
• rcfile : ost::gui::dng::init
• RED : ost::gfx
• REMOTE_REPOSITORIES : ost::io::remote

- s -

• scene : ost::gui::gosty_startup
• script : ost::ost_startup
• script_argv : ost::gui::dng::init
• SLOT_COUNT : ost::io::jpk_tags
• SPLASH_TEXT : ost::gui::init_splash
• STANDARD_AMINOACIDS : ost::conop
• sys_argv_backup : ost::ost_startup

- u -

• usage : ost::gui::dng::init , ost::ost_startup , ost::gui::dng::termuse

- v -

• VA_CYL_MAX_DETAIL : ost::gfx
• VA_ICO_SPHERE_MAX_DETAIL : ost::gfx
• VA_SPHERE_MAX_DETAIL : ost::gfx

- w -

• WATER_CHAIN_NAME : ost::mol::alg
• WHITE : ost::gfx
• working_dir : ost::gui::dng::init

- x -

• X : geom::Axis

- y -

• Y : geom::Axis
• YELLOW : ost::gfx

- z -

• Z : geom::Axis