_QSScoreGreedySearcher Class Reference

Inherits QSScorer.

Public Member Functions
def	__init__
def	SCCounts
def	ExtendMapping
Public Member Functions inherited from QSScorer
def	__init__
def	qsent1
def	chem_groups
def	qsent2
def	alns
def	Score
def	ScoreInterface
def	FromFlatMapping

Data Fields
	ref
	mdl
	ref_mdl_alns
	steep_opt_rate
	neighbors
	mdl_neighbors
	ref_chem_groups
	mdl_chem_groups
	ref_ch_group_mapper
	mdl_ch_group_mapper
	single_chain_scorer
	single_chain_cache

Additional Inherited Members
Static Public Member Functions inherited from QSScorer
def	FromMappingResult

Detailed Description

Definition at line 2604 of file chain_mapping.py.

Constructor & Destructor Documentation

def __init__	(		self,
			ref,
			mdl,
			ref_chem_groups,
			mdl_chem_groups,
			ref_mdl_alns,
			contact_d = 12.0,
			steep_opt_rate = None,
			greedy_prune_contact_map = False
	)

Greedy extension of already existing but incomplete chain mappings

Definition at line 2607 of file chain_mapping.py.

Member Function Documentation

def ExtendMapping	(		self,
			mapping,
			max_ext = None
	)

Definition at line 2679 of file chain_mapping.py.

def SCCounts	(		self,
			ref_ch,
			mdl_ch
	)

Definition at line 2664 of file chain_mapping.py.

Field Documentation

mdl

Definition at line 2613 of file chain_mapping.py.

mdl_ch_group_mapper

Definition at line 2646 of file chain_mapping.py.

mdl_chem_groups

Definition at line 2644 of file chain_mapping.py.

mdl_neighbors

Definition at line 2624 of file chain_mapping.py.

neighbors

Definition at line 2618 of file chain_mapping.py.

ref

Definition at line 2612 of file chain_mapping.py.

ref_ch_group_mapper

Definition at line 2645 of file chain_mapping.py.

ref_chem_groups

Definition at line 2643 of file chain_mapping.py.

ref_mdl_alns

Definition at line 2614 of file chain_mapping.py.

single_chain_cache

Definition at line 2658 of file chain_mapping.py.

single_chain_scorer

Definition at line 2657 of file chain_mapping.py.

steep_opt_rate

Definition at line 2615 of file chain_mapping.py.

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The documentation for this class was generated from the following file:

• build-2.7-doc/stage/lib64/python3.6/site-packages/ost/mol/alg/chain_mapping.py