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Class Hierarchy
This inheritance list is sorted roughly, but not completely, alphabetically:
[detail level 12345]
oC_Aligner
oC_CachedRMSD
oC_lDDTDecomposer
oC_QWidget
oCAAIndex
oCAAIndexData
oCadditive
oCadditive1
oCAdjacencyBitmap
oCAdminRights
oCAlgorithmBaseAlgorithm base class
oCAlignedColumnProvides access to a column in a aligned region or a sequence alignment
oCAlignedColumnIterator
oCAlignedCuboidAxis-aligned cuboid
oCAlignedPatch
oCAlignedRegionRegion in a sequence alignment
oCAlignmentHandleRepresentation of a multiple sequence alignemnt consisting of two or more sequences
oCAlignmentOptsOptions for local and global sequence alignment algorithms
oCAminoAcidSetAmino acid bit set
oCAminoAcidSetIterator
oCAngleViolationInfo
oCAssemblyInfo
oCAtomEntry
oCAtomGroup
oCAtomGroupEntry
oCAtomProp
oCAtomSpec
oCAutoCorrelateFnc
oCBackboneTrace
oCbasic_istream
oCbasic_ostream
oCBeacon
oCbinary_dispatch_ip< FNC >In-place binary dispatch
oCbinary_dispatch_op< FNC >Out-of-place binary dispatch
oCBinaryColExpr
oCBinaryDataSink
oCBinaryDataSource
oCBitmap
oCBlastHit
oCBlockModifier
oCBondEntry
oCBondLengthInfo
oCBondSpec
oCBondTable< ATOM >
oCBondTableEntry< ATOM >
oCBondViolationInfo
oCBuilder
oCBuildingBlock
oCBUInfo
oCByChainGetCol
oCByElementGetCol
oCCADResult
oCChainData
oCChainMapper
oCCHARMMData
oCChecker
oCChemClass
oCChemType
oCChiDefinition
oCCircle2
oCCircle2
oCcircular_iter< T >
oCClashEvent
oCClashInfo
oCClashingDistancesList of reference atom-atom distances to detect clashes between non-bonded atoms
oCClashingInfo
oCcluster
oCColorOp
oCcomplex
oCCompoundKnows about the atoms and bonds of a chemical compounds
oCCompoundLibBase
oCConjFnc
oCConopology
oCconst_circular_iter< T >
oCConstDataAbstract base class for read-only data
oCConstGenericPropContainer< H >
oCConstGenericPropContainer< AtomBase >
oCConstGenericPropContainer< BondHandle >
oCConstGenericPropContainer< ChainBase >
oCConstGenericPropContainer< ConstSequenceHandle >
oCConstGenericPropContainer< EntityBase >
oCConstGenericPropContainer< ResidueBase >
oCConstGenericPropContainer< SequenceHandle >
oCConstSequenceListList of immutable sequences
oCContact
oCContactEntity
oCContactPredictionScoreResult
oCContactScorer
oCContactScorerResultICS
oCContactScorerResultIPS
oCContactWeightMatrixMatrix to weight pairs of amino-acids
oCContextProfile
oCContextProfileDB
oCConvert< CONVERSIONTYPE, VALUETYPE >
oCCoordGroupHandleCoordinate group, for trajectories and such
oCCoordSourceCoordinate source
oCCosFnc
oCCRDReaderCHARMM coordinate file import
oCCuboidArbitrary oriented bounding cuboid
oCCuboidAxisCuboid axis defined by a normalized direction vector and a half extent
oCCustomCompound
oCCylinderPrim
oCDatabaseSQLite database handle
oCDataObserverAbstract base class of data observer
oCDate
oCdef_visitor
oCDefaultPepLib
oCDiag
oCDiagnostics
oCDihedralLow level dihedral implementation
oCDiscreteShrinkFncShrink image by integral amount
oCDist2MeanContainer for distances to mean for N structures. Main functionality: Get/Set, ExportXXX
oCDistanceMap
oCDistancesContainer for a pair wise distance for each structure. Each structure is identified by its index in the originally used alignment
oCDockQResult
oCDomain
oCDomains
oCDSSPAccessibilityParam
oCEdgeDesc
oCEditorBaseBase class for entity editors
oCEleImpl
oCEllipse2
oCenable_shared_from_this
oCEntityIOHandlerPure abstract base class for entity io handlers
oCEntityIOHandlerFactoryBasePure abstract base class for creation of a specfic entity io handle
oCEntityObserver
oCEntityPropertyMapper
oCEntityRenderer
oCEntityViewGetCol
oCEntityViewVisitorEntityViewVisitor interface
oCEntityVisitorEntityVisitor interface
oCIndexedVertexArray::Entry
oCequality_comparable
oCException
oCExpFnc
oCExplicitConvoluteFnc
oCExplicitCorrelateFnc
oCExporter
oCExtentDefines lower and upper valid indices
oCExtentIteratorExtent iterator
oCFastSphereRenderer
oCFFReader
oCFFTFnc
oCFileLoader
oCFindMemParam
oCFixedString< LENGTH >String class that uses an array of static size to hold the characters
oCFNC
oCForcefield
oCFormattedLine
oCFragmentImpl
oCFrequencyDomain
oCGaussianFilterBaseGaussian Filter
oCGaussianGradientMagnitudeFilterBaseFirst Derivative Gaussian Filter
oCGaussianLaplacianFilterBaseGaussian Filter
oCGDTResult
oCGenericPropContainerImplBase class for the implementation
oCGenPropStruct to store info about GenericProperties parsed from the
oCGfxNodeListAttrProxy
oCGfxNodeVisitor
oCGfxView
oCGLWinBase
oCGradientColor gradient
oCGradientLevelGetCol
oCGradientManager
oCGromacsData
oCGromacsPositionRuleEvaluator
oCGutterBlock
oCHalfFrequencyDomain
oCHBond
oCHBond
oCHBondableAtoms
oCHBondAcceptor
oCHBondDonor
oCHelp
oCHHblits
oCHHblits
oCHHblitsHeader
oCHHblitsHeader
oCHHblitsHit
oCHHblitsHit
oCHighestPeakSearch3DBase
oCHistogramBase
oCHMMData
oCHydrogenConstructor
oCHyperbola2
oCiAlignResult
oCImageFormatBase
oCImageStateBase
oCImageStateConstModIPVisitorBaseIn-place modifying image state const visitor base class
oCImageStateConstModOPVisitorBaseOut-of-place modifying image state const visitor base class
oCImageStateModIPVisitorBaseIn-place modifying image state visitor base class
oCImageStateModOPVisitorBaseOut-of-place modifying image state visitor base class
oCImageStateMorphVisitorBaseMorphing image state visitor base class
oCImageStateNonModVisitorBaseNon-modifying image state visitor base class
oCImmutableGradientInfoHandler
oCImmutablePresetInfoHandler
oCIndex< D >
oCIndex
oCIndexBase< D >
oCIndexBase< 1 >
oCIndexBase< 2 >
oCIndexBase< 3 >
oCIndexBase< 4 >
oCIndexBase< 5 >
oCIndexBase< 6 >
oCIndexBase< 7 >
oCIndexedVertexArray
oCIndexIterator
oCIndexIterator< D >
oCInfoConstVisitor
oCInfoGroup
oCInfoHandleMain info handle
oCInfoImpl
oCInfoItem
oCInfoPathEncapsulates path to info groups and items
oCInfoSet
oCInfoVisitor
oCInputEvent
oCInsDelGet insertions and deletions of an alignment
oCInteraction
oCIOManagerCentral registry for input/output handlers
oCIOProfile
oCIOProfileRegistry
oCIOProfiles
oCIsosurfaceGenerator
oCIsosurfaceGeneratorS
oCkeepingEntity information
oCkeepingEntity information
oClDDTBSScorer
oClDDTLocalScore
oClDDTScorer
oClDDTScorer
oClDDTSettings
oCLDT
oCLigandScorer
oCLine2Line2
oCLine3Line3
oCLinearCharacterContainer
oCLinearIndexer
oCLinearPositionContainer
oCLineAverageBaseComputes mean value of columns or lines
oCLineIteratorLine iterator generator
oCLineSlice
oCLocalSigmaThresholdBase
oCLog10Fnc
oCLogFnc
oCLogger
oCLogSink
oCLPaddedFloat
oCLPaddedInt
oCMAEReader
oCManyOf
oCMapHandleGetCol
oCMapIOHandler
oCMapIOHandlerFactoryBase
oCMapOctreeOctree datastructure for 3D images
oCMappingResult
oCMaskBase
oCMaskImageBase
oCMaskVisitor
oCMaterial
oCMeanlDDT
oCMeanSquareMinimizer
oCMeasurement
oCMirrorFnc
oCMMAlignResult
oCMMCifEntityDesc
oCMMCifInfoContainer class for additional information from MMCif files
oCMMCifInfoBioUnit
oCMMCifInfoCitation
oCMMCifInfoEntityBranchLinkStore information on branched structures (oligosaccharides)
oCMMCifInfoObsoleteContainer class for information on obsolete entries
oCMMCifInfoRevisionsContainer class for information on file revisions See Python doc
oCMMCifInfoStructDetails
oCMMCifInfoStructRef
oCMMCifInfoStructRefSeq
oCMMCifInfoStructRefSeqDif
oCMMCifInfoTransOp
oCMMCifWriterEntity
oCMMPreprocessor
oCModeller
oCModelRepository
oCMolckSettings
oCMouseEvent
oCmultiplicative
oCmultiplicative2
oCNACCESSAccessibilityParam
oCNode
oCNodeEntry
oCNormalizeFncAbstract normalizer base class
oCIndexedVertexArray::NormalizerTriEntry
oCIndexedVertexArray::NormalizerVertexEntry
oCobject
oCObservableTemplated observable class
oCObserver
oCOcRangeVector
oCOctreeIsocontIsocontouring of maps using an octree-optimization
oCOctreeNode
oCOMF
oCOneOf
oCOpBase
oCOptionParser
oCOverlapResult
oCOverlayManager
oCOverlayManagerObserverAbstract observer base class for the OverlayManager
oCPagedArray< T, P >Vector style container that splits content in pages, suited for large amounts of data. Comes with serialization functionality
oCPagedArray< char, 1048576 >
oCPagedArray< uint64_t, 1048576 >
oCPairSubstWeightMatrixPosition-independet pair substitution weight matrix
oCPairToTupleConverter< T1, T2 >Helper to convert between python tuple and std::pair
oCPasteFnc
oCPDBize
oCPDBReader
oCPDBWriter
oCRasterImage::PixelSingle pixel spec
oCPixelSamplingHelper class to handle pixel sampling
oCPlane
oCPodVector< T >Vector container that treats its data as POD - even if it isn't in the strict sense
oCPointCloud
oCPointCloudManager
oCpointer_it< T >
oCPolygon2
oCPooledWidget
oCPovState
oCPowerSpectrumFnc
oCPowFnc
oCPQRReaderCHARMM coordinate file import
oCPrebuildSphereEntry
oCPreparedStatement
oCPreset
oCProcessor
oCProfile
oCProfileColumnDefines profile of 20 frequencies for one residue
oCProfileDBContains a DB of profiles (identified by a unique name (String))
oCProfileHandleProvides a profile for a sequence
oCProfileIOHandlerPure abstract base class for profile io handlers
oCProfileIOHandlerFactoryBasePure abstract base class for creation of a specfic io handler
oCProgress
oCProp
oCPtrObserver< T >
oCPythonContext
oCPythonContextParser
oCPythonToken
oCPythonTokenizer
oCQAbstractItemModel
oCQAbstractListModel
oCQAbstractTableModel
oCQCheckBox
oCQComboBox
oCQCompleter
oCQDialog
oCQDirModel
oCQDockWidget
oCQItemDelegate
oCQMainWindow
oCQMdiArea
oCQMenu
oCQObject
oCQObject
oCQOpenGLWindow
oCQPlainTextDocumentLayout
oCQPlainTextEdit
oCQRadioButton
oCQSEntity
oCQSplitter
oCQSScorer
oCQSscorer
oCQSScorerResult
oCQStackedWidget
oCQSyntaxHighlighter
oCQTabBar
oCQTableView
oCQTabWidget
oCQTextStream
oCQToolBar
oCQToolButton
oCquantity< Dimensions >
oCquantity< detail::scalar_dimension >
oCQuerySelection Query
oCQueryErrorDesc
oCQueryFlagQuery flags
oCQueryImplQuery statement implementation
oCQueryLexer
oCQueryStateHolds state used during query evaluation
oCQueryToken
oCQueryViewWrapper
oCQWidget
oCRandomizeFnc
oCRange
oCRange
oCRangeHandler
oCRasterImageGeneric raster image
oCRectangle2
oCRefMode
oCRemoteRepository
oCRenderOp
oCRenderOptions
oCReprResult
oCResidueDefinition
oCResidueNames
oCRGBAColor
oCRingFinderClass for finding rings in an entity
oCRotation3
oCRowSet< R >Row set iterator
oCruntime_error
oCRuntimeError
oCSceneMain class for organization and root for the graphical display
oCSceneFX
oCSceneObserverInterface for observing graphical objects
oCScorer
oCSDFReader
oCSecStructureSecondary structure types as defined by DSSP. For convenience, the enum values match the characters used in the DSP file format
oCSecStructureSegmentConsecutive secondary structure element
oCSelection
oCSelHelper
oCSelItem
oCSelStmt
oCSequenceIOHandlerPure abstract base class for entity io handlers
oCSequenceIOHandlerFactoryBasePure abstract base class for creation of a specfic alignment io handler
oCSequenceListList of sequences
oCSequenceListImpl
oCSequenceListIterator< T, I >
oCSerializeHelper< B, T >
oCSerializeHelper< false, T >
oCSerializeHelper< true, T >
oCSerializeWriteHelper< B, T >
oCSerializeWriteHelper< false, T >
oCSerializeWriteHelper< true, T >
oCSettings
oCShader
oCShellHistory
oCShiftFnc
oCSidechainAtomRule
oCSimulation
oCSinFnc
oCSizeClass encapsulating 1D to 3D size
oCSliceFnc
oCSmoothMaskImageBase
oCSpatialDomain
oCSpatialOrganizer< ITEM, VEC >Spatial organizer
oCSpatialOrganizer< AtomImplPtr >
oCSpatialOrganizer< SurfaceVertexID >
oCSphere
oCSphere
oCSpherePrim
oCSpline
oCSplineEntry
oCSqrtFnc
oCStarDataItem
oCStarLoopDesc
oCStarParserParser for the STAR file format
oCStarWriter
oCStarWriterObject
oCStarWriterValue
oCStatAccumulator< MAX_MOMENT, DATATYPE >
oCStatBase
oCStateExtractor
oCStatMinMaxBase
oCSteep
oCStereoChemicalAngleViolation
oCStereoChemicalBondViolation
oCStereoChemicalParamsList of stereo chemical parameters (Bonds and angles)
oCStereoChemicalProps
oCStereoChemistryInfo
oCGradient::Stop
oCstr
oCStringOrRegexParam
oCStringRefConvenient datatype for referencing character data
oCSubstWeightMatrixPosition-independet substitution weight matrix
oCSuperpositionResultStores the number of cycles and the two final EntityViews (in case IterativeSuperposition was applied), the root mean square deviation of the two superposed objects and the transformation matrix (geom::Mat4) to superpose input1 onto input2
oCSurfaceHandle
oCSurfaceImpl
oCSurfaceIOHandler
oCSurfaceIOHandlerFactoryBase
oCSurfaceTri
oCSurfaceVertex
oCSymbolDrawingStrategy
oCSymmetryOp
oCSymmetrySettings
oCSystemCreator
oCTableCol
oCTableRow
oCTableSelector
oCTanFnc
oCTempDirWithFiles
oCTerminiConstructor
oCTerminiExceptions
oCTestCase
oCTestResult
oCTextPrim
oCTexture
oCtiff_warning_handler_wrapper
oCTMAlignResult
oCTMScoreResult
oCTopology
oCTopologyCreator
oCTorsionHandleNamed torsion (dihedral) angle
oCTraceProfileEntry
oCTransformBasic and essential transformation class, including translation, rotation and center of rotation
oCtransform
oCTransformationTransformation base class
oCTransformFnc
oCTriMatrix< T >Triangular matrix template
oCTriMatrix< ost::seq::alg::Distances >
oCTriMatrix< Real >
oCToolOptionEnum::Tuple
oCTwoOf
oCtypesStructure
oCtypesStructure
oCunary_dispatch_ip< FNC >In-place unary dispatch
oCunary_dispatch_op< FNC >Out-of-place unary dispatch
oCUniformGetCol
oCUniqueAtomIdentifierContains the infomation needed to uniquely identify an atom in a structure
oCUnits
oCValueError
oCValueHolder< V >
oCValueHolder< T >
oCFastSphereRenderer::VData
oCvector
oCVectorToListConverter< T >Helper to convert between python list tuple and std::vecot
oCViewAddFlagFlags to control the behaviour when adding handles to views
oCViewport
oCVisibilityOp
oCWidgetState
oCWidgetStateSaverConfig
oCWithinParam
oCBASE
oCColorSelectWidget
oCComboOptionsWidget
oCEnum
oCImageStateConstModIPAlgorithm
oCImageStateModIPAlgorithm
oCImmutableGradientInfoHandler
oCImmutablePresetInfoHandler
oCQLabel
oCQWidget
oCRenderModeWidget
\CToolBarOptionsWidget