Domains Class Reference

#include <domain_find.hh>

Public Member Functions
size_t	GetNumFreeResidues () const
Real	GetFreeD () const
Real	GetFreeS () const
const std::vector< Domain > &	GetDomains () const
const std::vector< int > &	GetComponents () const
ost::img::ImageHandle	GetAdjMap () const

Static Public Member Functions
static DomainsPtr	FromAln (ost::seq::AlignmentHandle aln, Real tolerance, Real radius, Real threshold, int idx_a=-1, int idx_b=-1)
static DomainsPtr	FromCOM (const SimilarityMatrix &sim, ost::seq::AlignmentHandle aln, Real tolerance, int idx_a=-1, int idx_b=-1)
static DomainsPtr	FromDistMats (const DistanceMatrix &dmat_a, const DistanceMatrix &dmat_b, Real tolerance, Real radius, Real threshold, int num_threads, bool defined_only, bool adj_map)

Detailed Description

Definition at line 34 of file domain_find.hh.

Member Function Documentation

FromAln()

static DomainsPtr FromAln ( ost::seq::AlignmentHandle  aln, Real  tolerance, Real  radius, Real  threshold, int  idx_a = -1, int  idx_b = -1  )

static

FromCOM()

static DomainsPtr FromCOM ( const SimilarityMatrix &  sim, ost::seq::AlignmentHandle  aln, Real  tolerance, int  idx_a = -1, int  idx_b = -1  )

static

FromDistMats()

static DomainsPtr FromDistMats ( const DistanceMatrix &  dmat_a, const DistanceMatrix &  dmat_b, Real  tolerance, Real  radius, Real  threshold, int  num_threads, bool  defined_only, bool  adj_map  )

static

GetAdjMap()

ost::img::ImageHandle GetAdjMap ( ) const

inline

Definition at line 65 of file domain_find.hh.

GetComponents()

const std::vector<int>& GetComponents ( ) const

inline

Definition at line 63 of file domain_find.hh.

GetDomains()

const std::vector<Domain>& GetDomains ( ) const

inline

Definition at line 62 of file domain_find.hh.

GetFreeD()

Real GetFreeD ( ) const

inline

Definition at line 59 of file domain_find.hh.

GetFreeS()

Real GetFreeS ( ) const

inline

Definition at line 60 of file domain_find.hh.

GetNumFreeResidues()

size_t GetNumFreeResidues ( ) const

inline

Definition at line 57 of file domain_find.hh.

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The documentation for this class was generated from the following file:

• build-2.9.0-doc/stage/include/ost/mol/alg/domain_find.hh