#include <alignment_view_object.hh>

Inherits SequenceViewObject.

Public Member Functions
	AlignmentViewObject (const seq::AlignmentHandle &alignment, QObject *parent=0)

QVariant	GetData (int row, int column, int role)

const seq::AlignmentHandle &	GetAlignment ()

void	SetDisplayMode (const QString &mode)

Public Member Functions inherited from SequenceViewObject
	SequenceViewObject (seq::SequenceList &sequences, const QList< QString > &names, QObject *parent=0)

	SequenceViewObject (seq::SequenceHandle &sequence, const QString &name, QObject *parent=0)

	SequenceViewObject (mol::ChainView &chain, const QString &name, QObject *parent=0)

	SequenceViewObject (const gfx::EntityP &entity, QObject *parent=0)

	SequenceViewObject (QObject *parent=0)

void	Init ()

void	AddSequence (seq::ConstSequenceHandle sequence, const QString &name=QString())

void	AddChain (mol::ChainView &chain, const QString &name=QString())

void	AttachGfxObject (gfx::EntityP &ent)

gfx::EntityP &	GetGfxObject ()

QMap< int, QList< int > >	GetIndexesForView (const mol::EntityView &view)

QMap< int, QList< int > >	GetIndexesForSubject (const QString &subject, const QString &sequence_name=QString())

Public Member Functions inherited from BaseViewObject
	BaseViewObject (QObject *parent=0)

void	InsertRow (int pos, BaseRow *row)

void	RemoveRow (BaseRow *row)

BaseRow *	GetRow (int pos)

int	GetRowCount ()

int	GetMaxColumnCount () const

virtual void	SetSelection (int row, const QSet< int > &added, const QSet< int > &removed)

virtual bool	SetData (int row, int column, const QVariant &value, int role)

virtual Qt::ItemFlags	Flags (int row, int column) const

virtual const QStringList &	GetDisplayModes ()

virtual const QString &	GetCurrentDisplayMode ()

void	DoubleClicked (int row, int column)

void	ZoomIn ()

void	ZoomOut ()

Additional Inherited Members
Protected Member Functions inherited from BaseViewObject
virtual void	AddDisplayMode (const QString &mode)

Protected Attributes inherited from BaseViewObject
QList< BaseRow * >	rows_

QString	current_display_mode_

QStringList	display_modes_

Static Protected Attributes inherited from SequenceViewObject
static const QString	properties_mode

static const QString	secondary_structure_mode

static AlignPropertiesPainter *	align_properties_painter

static ConservationPainter *	conservation_painter

static BackgroundPainter *	background_painter

static SeqSecStrPainter *	seq_secondary_structure_painter

static SeqSelectionPainter *	seq_selection_painter

static SeqTextPainter *	seq_text_painter

Detailed Description

Definition at line 37 of file alignment_view_object.hh.

Constructor & Destructor Documentation

◆ AlignmentViewObject()

AlignmentViewObject	(	const seq::AlignmentHandle &	alignment,
		QObject *	parent = `0`
	)

Member Function Documentation

◆ GetAlignment()

const seq::AlignmentHandle& GetAlignment ( )

◆ GetData()

QVariant GetData	(	int	row,
		int	column,
		int	role
	)

virtual

Reimplemented from BaseViewObject.

◆ SetDisplayMode()

void SetDisplayMode ( const QString & mode )

virtual

Reimplemented from SequenceViewObject.

The documentation for this class was generated from the following file:

build-2.9.0-doc/stage/include/ost/gui/sequence_viewer/alignment_view_object.hh

Public Member Functions