ost::bindings Namespace Reference

Namespaces
namespace	blast
namespace	cadscore
namespace	clustalw
namespace	dockq
namespace	dssp
namespace	hbplus
namespace	hhblits
namespace	hhblits2
namespace	hhblits3
namespace	ialign
namespace	kclust
namespace	lga
namespace	mmseqs2
namespace	msms
namespace	naccess
namespace	tmtools
namespace	utils

Data Structures
struct	MMAlignResult
struct	TMAlignResult

Functions
TMAlignResult	WrappedTMAlign (const geom::Vec3List &pos_one, const geom::Vec3List &pos_two, const ost::seq::SequenceHandle &seq1, const ost::seq::SequenceHandle &seq2, bool fast=false, bool rna=false)
MMAlignResult	WrappedMMAlign (const std::vector< geom::Vec3List > &pos_one, const std::vector< geom::Vec3List > &pos_two, const ost::seq::SequenceList &seq1, const ost::seq::SequenceList &seq2, const std::vector< bool > &rna1, const std::vector< bool > &rna2, bool fast=false, const std::map< int, int > &mapping=std::map< int, int >())
TMAlignResult	WrappedTMAlign (const ost::mol::ChainView &ent1, const ost::mol::ChainView &ent2, bool fast=false)
MMAlignResult	WrappedMMAlign (const ost::mol::EntityView &ent1, const ost::mol::EntityView &ent2, bool fast=false, const std::map< String, String > &mapping=std::map< String, String >())

Function Documentation

WrappedMMAlign() [1/2]

MMAlignResult WrappedMMAlign	(	const ost::mol::EntityView &	ent1,
		const ost::mol::EntityView &	ent2,
		bool	fast = false,
		const std::map< String, String > &	mapping = std::map< String, String >()
	)

WrappedMMAlign() [2/2]

MMAlignResult WrappedMMAlign	(	const std::vector< geom::Vec3List > &	pos_one,
		const std::vector< geom::Vec3List > &	pos_two,
		const ost::seq::SequenceList &	seq1,
		const ost::seq::SequenceList &	seq2,
		const std::vector< bool > &	rna1,
		const std::vector< bool > &	rna2,
		bool	fast = false,
		const std::map< int, int > &	mapping = std::map< int, int >()
	)

WrappedTMAlign() [1/2]

TMAlignResult WrappedTMAlign	(	const geom::Vec3List &	pos_one,
		const geom::Vec3List &	pos_two,
		const ost::seq::SequenceHandle &	seq1,
		const ost::seq::SequenceHandle &	seq2,
		bool	fast = false,
		bool	rna = false
	)

WrappedTMAlign() [2/2]

TMAlignResult WrappedTMAlign	(	const ost::mol::ChainView &	ent1,
		const ost::mol::ChainView &	ent2,
		bool	fast = false
	)