ost.io.remote Namespace Reference

Data Structures
class	RemoteRepository

Functions
	RemoteGet (id, from_repo='pdb')
	RemoteLoad (id, from_repo='pdb')

Variables
dict	REMOTE_REPOSITORIES

Function Documentation

RemoteGet()

RemoteGet	(		id,
			from_repo = 'pdb'
	)

Invokes :func:`RemoteRepository.Get` on predefined repositories 
('pdb', 'smtl', 'cif', 'pdb_redo')

:param from_repo:    One of the predefined repositories
:type from_repo:     :class:`str`

Definition at line 124 of file remote.py.

RemoteLoad()

RemoteLoad	(		id,
			from_repo = 'pdb'
	)

Invokes :func:`RemoteRepository.Load` on predefined repositories 
('pdb', 'smtl', 'cif', 'pdb_redo')

:param from_repo:    One of the predefined repositories
:type from_repo:     :class:`str`

Definition at line 137 of file remote.py.

Variable Documentation

REMOTE_REPOSITORIES

dict REMOTE_REPOSITORIES

Initial value:

=  {
    'pdb' : RemoteRepository('rcsb.org (PDB)', 'https://files.rcsb.org/download/$ID.pdb.gz',
                   type='pdb', id_transform='upper'),
    'smtl' : RemoteRepository('SMTL', 'https://swissmodel.expasy.org/templates/$ID.pdb',
                   type='pdb', id_transform='lower'),
    'cif' : RemoteRepository('rcsb.org (mmCIF)', 'https://files.rcsb.org/download/$ID.cif.gz',
                   type='cif', id_transform='lower'),
    'pdb_redo' : RemoteRepository('pdbredo', 'https://pdb-redo.eu/db/$ID/$ID_besttls.pdb.gz',
                   type='pdb', id_transform='lower'),
}

Definition at line 113 of file remote.py.