FastaIOHandler Class Reference

#include <fasta_io_handler.hh>

Inherits SequenceIOHandler, and SequenceIOHandler.

Public Member Functions
virtual void	Import (seq::SequenceList &aln, const boost::filesystem::path &loc)
virtual void	Export (const seq::ConstSequenceList &aln, const boost::filesystem::path &loc) const
virtual void	Import (seq::SequenceList &aln, std::istream &instream)
virtual void	Export (const seq::ConstSequenceList &aln, std::ostream &ostream) const
virtual void	Import (seq::SequenceList &aln, const boost::filesystem::path &loc)
virtual void	Export (const seq::ConstSequenceList &aln, const boost::filesystem::path &loc) const
virtual void	Import (seq::SequenceList &aln, std::istream &instream)
virtual void	Export (const seq::ConstSequenceList &aln, std::ostream &ostream) const
Public Member Functions inherited from SequenceIOHandler
virtual	~SequenceIOHandler ()
virtual	~SequenceIOHandler ()

Static Public Member Functions
static bool	ProvidesImport (const boost::filesystem::path &loc, const String &format="auto")
static bool	ProvidesExport (const boost::filesystem::path &loc, const String &format="auto")
static String	GetFormatName ()
static String	GetFormatDescription ()
static bool	ProvidesImport (const boost::filesystem::path &loc, const String &format="auto")
static bool	ProvidesExport (const boost::filesystem::path &loc, const String &format="auto")
static String	GetFormatName ()
static String	GetFormatDescription ()

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Detailed Description

Definition at line 29 of file fasta_io_handler.hh.

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Member Function Documentation

virtual void Export ( const seq::ConstSequenceList &  aln, const boost::filesystem::path &  loc  ) const

virtual

Implements SequenceIOHandler.

virtual void Export ( const seq::ConstSequenceList &  aln, const boost::filesystem::path &  loc  ) const

virtual

Implements SequenceIOHandler.

virtual void Export ( const seq::ConstSequenceList &  aln, std::ostream &  ostream  ) const

virtual

Implements SequenceIOHandler.

virtual void Export ( const seq::ConstSequenceList &  aln, std::ostream &  ostream  ) const

virtual

Implements SequenceIOHandler.

static String GetFormatDescription ( )

inlinestatic

Definition at line 48 of file fasta_io_handler.hh.

static String GetFormatDescription ( )

inlinestatic

Definition at line 48 of file fasta_io_handler.hh.

static String GetFormatName ( )

inlinestatic

Definition at line 47 of file fasta_io_handler.hh.

static String GetFormatName ( )

inlinestatic

Definition at line 47 of file fasta_io_handler.hh.

virtual void Import ( seq::SequenceList &  aln, const boost::filesystem::path &  loc  )

virtual

Implements SequenceIOHandler.

virtual void Import ( seq::SequenceList &  aln, const boost::filesystem::path &  loc  )

virtual

Implements SequenceIOHandler.

virtual void Import ( seq::SequenceList &  aln, std::istream &  instream  )

virtual

Implements SequenceIOHandler.

virtual void Import ( seq::SequenceList &  aln, std::istream &  instream  )

virtual

Implements SequenceIOHandler.

static bool ProvidesExport ( const boost::filesystem::path &  loc, const String &  format = "auto"  )

static

static bool ProvidesExport ( const boost::filesystem::path &  loc, const String &  format = "auto"  )

static

static bool ProvidesImport ( const boost::filesystem::path &  loc, const String &  format = "auto"  )

static

static bool ProvidesImport ( const boost::filesystem::path &  loc, const String &  format = "auto"  )

static

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The documentation for this class was generated from the following files:

• stage/include/ost/io/fasta_io_handler.hh
• stage/include/ost/io/seq/fasta_io_handler.hh