Namespaces
namespace	atom
namespace	impl

Data Structures
struct	AllAtomPotentialOpts
	interaction statistics options More...
class	AllAtomPotential
class	AminoAcidSetIterator
class	AminoAcidSet
	Amino acid bit set. More...
class	Histogram
	histogram specialization for multi classifier More...
class	Index< 1 >
class	Index< 2 >
class	Index< 3 >
class	Index< 4 >
class	Index< 5 >
class	Index< 6 >
class	Index< 7 >
class	IndexIterator
class	InteractionStatistics
class	ClassifierBase
	Base class for classifiers. More...
class	IntegralClassifier
	Classifier for integral classes. More...
class	ContinuousClassifier
	Classifier for real valued classes. More...
struct	Classifier< int >
struct	Classifier< Real >
struct	Classifier< impl::NullType >
struct	NullFind
struct	IndexFind< C, impl::NullType, I >
struct	IndexFind
struct	NumberOfClasses< impl::NullType >
struct	NumberOfClasses
class	MultiClassifier
	generic n-dimensional classifier More...
struct	PackingPotentialOpts
class	PackingPotential
	packing (solvent accessibility) potential More...
class	PackingStatistics
class	ReducedPotential
	reduced model statistical potential operating on the residue level More...
struct	ReducedStatOptions
	aggregates the option for the reduced model statistics More...
class	ReducedStatistics
struct	TorsionPotentialOptsSolis
	torsion potential options More...
class	TorsionPotentialSolis
	Torsion potential. More...
class	TorsionStatisticsSolis
	sequence dependent torsion statistics More...
struct	TorsionPotentialOpts
	torsion potential options More...
class	TorsionPotential
	Torsion potential. More...
class	TorsionStatistics
	sequence dependent torsion statistics More...

Typedefs
typedef boost::shared_ptr < AllAtomPotential >	AllAtomPotentialPtr
typedef Histogram< int, int, Real >	InteractionHistogram
typedef boost::shared_ptr < InteractionStatistics >	InteractionStatisticsPtr
typedef boost::shared_ptr < PackingPotential >	PackingPotentialPtr
typedef Histogram< int, int >	PackingHistogram
typedef boost::shared_ptr < PackingStatistics >	PackingStatisticsPtr
typedef boost::shared_ptr < ReducedPotential >	ReducedPotentialPtr
typedef MultiClassifier< float, int, int, float, float >	ReducedEnergies
typedef boost::shared_ptr < ReducedStatistics >	ReducedStatisticsPtr
typedef Histogram< int, int, float, float >	ReducedHistogram
typedef std::vector< AminoAcidSet >	AminoAcidAlphabet
typedef boost::shared_ptr < TorsionPotentialSolis >	TorsionPotentialSolisPtr
typedef boost::shared_ptr < TorsionStatisticsSolis >	TorsionStatisticsSolisPtr
typedef boost::shared_ptr < TorsionPotential >	TorsionPotentialPtr
typedef boost::shared_ptr < TorsionStatistics >	TorsionStatisticsPtr

Enumerations
enum	AminoAcid { Ala, Arg, Asn, Asp, Gln, Glu, Lys, Ser, Cys, Met, Trp, Tyr, Thr, Val, Ile, Leu, Gly, Pro, His, Phe, Xxx }

Functions
DLLEXPORT_OST_QA AminoAcid	ResidueToAminoAcid (const mol::ResidueHandle &r)
DLLEXPORT_OST_QA String	AminoAcidToResidueName (AminoAcid aa)
DLLEXPORT_OST_QA String	OneLetterCodeToResidueName (char olc)
DLLEXPORT_OST_QA AminoAcid	OneLetterCodeToAminoAcid (char olc)
char DLLEXPORT_OST_QA	ResidueNameToOneLetterCode (String rn)
DLLEXPORT_OST_QA std::ostream &	operator<< (std::ostream &os, const AminoAcidSet &aa_set)
DLLEXPORT_OST_QA atom::ChemType	GetAtomTypeByName (AminoAcid amino_acid, const String &aname)
Real DLLEXPORT_OST_QA	ClashScore (const mol::EntityView &ent_a, const mol::EntityView &ent_b)
Real DLLEXPORT_OST_QA	ClashScore (const mol::EntityHandle &ent_a, const mol::EntityView &ent_b)
Real DLLEXPORT_OST_QA	ClashScore (const mol::AtomHandle &atom, const mol::EntityView &ent_b)
Real DLLEXPORT_OST_QA	StericEnergy (const geom::Vec3 &pos1, Real r1, const geom::Vec3 &pos2, Real r2)