#include <subst_weight_matrix.hh>
Static Public Attributes |
| static const int | ALPHABET_SIZE = 'Z'-'A'+1 |
Detailed Description
position-independet substitution weight matrix
Definition at line 37 of file subst_weight_matrix.hh.
Member Typedef Documentation
Constructor & Destructor Documentation
Initialize substitution matrix with zero.
In order to get a useful substitution weight matrix, use SetWeight(). Alternatively you may want to load the substitution from an info group.
Definition at line 46 of file subst_weight_matrix.hh.
Member Function Documentation
| WeightType GetWeight |
( |
char |
aa_one, |
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|
char |
aa_two |
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) |
| const |
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inline |
| void SetWeight |
( |
char |
aa_one, |
|
|
char |
aa_two, |
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|
WeightType |
weight |
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) |
| |
|
inline |
Field Documentation
| const int ALPHABET_SIZE = 'Z'-'A'+1 |
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static |
The documentation for this class was generated from the following file:
