- c -

• c_str() : FixedString< LENGTH >
• ca_chains() : QSscoreEntity
• ca_entity() : QSscoreEntity
• CacheBoundingBox() : Entity
• calc_rotmat() : CylinderPrim
• CalcDensityForceKernel() : CalcDensityForceKernel
• calcForcesAndEnergy() : DensityForceImpl
• CalcFullNormals() : IndexedVertexArray
• CalcIntpolValue() : ImageStateImpl< T, D >
• CalcIntpolWeights() : ConstData
• CalcNormals() : IndexedVertexArray
• CalculateHistogram() : MapIso
• CalculateStat() : MapIso
• CalculateSurface() : SurfaceContextMenu
• call() : unary_dispatch_ip< FNC > , unary_dispatch_op< FNC >
• CanApplyRenderOptions() : CartoonRenderOptions , CPKRenderOptions , CustomRenderOptions , LineTraceRenderOptions , RenderOptions , SimpleRenderOptions , SlineRenderOptions , TraceRenderOptions
• CanApplyTo() : GradientLevelColorOp , MapHandleColorOp , UniformColorOp , MapHandleColorOp , BasicGradientColorOp , ByChainColorOp , ByElementColorOp , ColorOp , EntityViewColorOp
• Cancel() : PresetEditor , UniformColorOpWidget , GradientLevelColorOpWidget , ByElementColorOpWidget , ByChainColorOpWidget , RenderOpWidget , VisibilityOpWidget
• CanOperateOn() : Manipulator , MapTool , MeasureTool , SelectionTool , Tool
• CanSetOptions() : CartoonRenderer , CPKRenderer , CustomRenderer , DebugRenderer , EntityRenderer , LineTraceRenderer , SimpleRenderer , SlineRenderer , TraceRenderer
• capacity() : FixedString< LENGTH > , PodVector< T >
• Capture() : CoordGroupHandle , CoordSource
• CaptureInto() : CoordSource , CoordGroupHandle
• Cartesian() : Cartesian
• CartoonRenderer() : CartoonRenderer
• CartoonRenderOptions() : CartoonRenderOptions
• cbegin() : Polygon2
• CCP4() : CCP4
• cend() : Polygon2
• center() : DataViewerPanelBase
• CenterOn() : Scene
• CenterOnAtom() : SceneMenu
• CenterOnChain() : SceneMenu
• CenterOnObjects() : SceneSelection
• CenterOnResidue() : SceneMenu
• CenterOnSelection() : SceneMenu
• CenterOnView() : SceneMenu
• CenterSpatialOrigin() : ImageHandle , ImageStateImpl< T, D >
• Chain() : Builder
• chain_mapping() : QSscorer
• ChainBase() : ChainBase
• ChainHandle() : ChainHandle
• ChainImpl() : ChainImpl
• ChainView() : ChainView
• ChangeColor() : ByElementWidget , ByChainWidget , ByEntityWidget , ColorSelectWidget , GradientEditor , PresetWidget , UniformColorWidget
• ChangeColors() : UniformColorWidget
• Changed() : SeqSearchBar , SpacenavControl
• ChangeDisplayMode() : SequenceViewer
• ChangeSelectedItem() : ComboOptionsWidget , ToolBarOptionsWidget
• ChangeVerbositySlider() : Perspective
• ChangeViewColor() : ByElementWidget , ByChainWidget , ByEntityWidget , GradientEditor , UniformColorWidget
• check() : TransitionGuard , HistoryGuard , EditPositionGuard , BlockStatusGuard
• check_flag() : EditPositionGuard
• CheckAllFlags() : SelHelper
• checkAutomaticTransitions() : State
• Checker() : Checker
• checkEvent() : State , KeyEventTransition , MouseEventTransition
• CheckFlags() : SelHelper
• CheckForCompleteness() : Checker
• CheckForNonStandard() : Checker
• CheckForUnknownAtoms() : Checker
• CheckMinOneFlag() : SelHelper
• CheckNotFlags() : SelHelper
• checkTransition() : AutomaticTransition
• CheckValidity() : AtomBase , BondHandle , ChainBase , EntityBase , ResidueBase , TorsionHandle , ConstSequenceList , SequenceList
• chem_groups() : QSscoreEntity
• chem_mapping() : QSscorer
• ChemClass() : ChemClass
• ChemdictParser() : ChemdictParser
• ChemType() : ChemType
• Circle2() : Circle2
• CircleDrawingStrategy() : CircleDrawingStrategy
• CircleMask() : CircleMask
• circular_iter() : circular_iter< T >
• ClashEvent() : ClashEvent
• ClashingDistances() : ClashingDistances
• ClashingInfo() : ClashingInfo
• CleanColorOps() : Entity , GfxObj , Surface
• Cleanup() : IndexedVertexArray , HHblits , TempDirWithFiles
• CleanupFailed() : HHblits
• Clear() : GfxObj , GfxView , FastSphereRenderer , PrimList , IndexedVertexArray , PointlistOverlay , MessageWidget , PythonContext , SequenceModel , InfoSet , LineSlice , FormattedLine , StarLoopDesc , SpatialOrganizer< ITEM, VEC >
• clear() : PodVector< T > , ProfileHandle
• ClearActiveOverlay() : DataViewer
• ClearCache() : CompoundLib
• ClearClickPosition() : InfoPanel
• ClearDirectionality() : AtomImpl
• ClearExtent() : Argand
• ClearLabels() : GfxObj
• ClearMask() : MaskOverlay
• ClearMeasurements() : MeasureTool
• ClearOverlays() : DataViewer
• ClearPeakList() : HighestPeakSearch3DBase
• ClearProps() : GenericPropContainerImpl , GenericPropContainer< H >
• ClearSelection() : InfoPanel
• ClearShift() : MaskOverlay
• ClearState() : MMCifReader
• ClearTransform() : EntityHandle , EntityImpl
• ClearViews() : EntityRenderer
• Click() : MeasureTool , SelectionTool , Tool
• clicked() : DataViewerPanelBase
• ClickedPositionIsVisible() : DataViewerPanelBase
• Clip() : RangeHandler
• ClipMinMax() : RangeHandler
• Clone() : ViewerNormalizer , LinearNormalizer , LinearRangeNormalizer , LogNormalizer , LogRangeNormalizer , TransmissionToODNormalizer , CircleMask , OpBase , AndOp , OrOp , XorOp , CompositeMask , ExtentMask , ImageStateBase , ImageStateImpl< T, D > , InvertedMask , MaskBase , NormalizerImpl , NoOpNormalizer , PolygonMask , SphericalMask
• CloneState() : ImageStateImpl< T, D >
• closeEvent() : DockWidget , GostyMainWindow
• clustalw_bin() : QSscorer
• ColladaExporter() : ColladaExporter
• Color() : Color
• ColorBy() : GfxObj , GfxObjBase , MapSlab , Surface , Entity , GfxObj
• ColorByChain() : Entity
• ColorByElement() : Entity
• ColorOfAtom() : ByElementGetCol , ByChainGetCol , UniformGetCol , GradientLevelGetCol , EntityViewGetCol , MapHandleGetCol
• ColorOp() : ColorOp
• columnCount() : SequenceModel , SceneWinModel , TableModel
• columnCountChanged() : SequenceTableView
• columns_begin() : ProfileHandle
• columns_end() : ProfileHandle
• complete() : OstCompleterBase
• Complete() : PythonShellWidget
• CompositeMask() : CompositeMask
• Compound() : Compound
• ComputeEnrichment() : Table
• ComputeEnrichmentAUC() : Table
• ComputeLogROCAUC() : Table
• ComputeMCC() : Table
• ComputeROC() : Table
• ComputeROCAUC() : Table
• Connect() : EditorBase , EntityImpl , BuildingBlock , EditorBase
• ConnectAtomsOfResidue() : Processor
• ConnectorImpl() : ConnectorImpl
• ConnectRendererBase() : ConnectRendererBase
• ConnectResidues() : Processor
• ConnectToPrev() : Builder
• ConservationPainter() : ConservationPainter
• const_circular_iter() : const_circular_iter< T >
• ConstData() : ConstData
• ConstImageHandle() : ConstImageHandle
• ConstModIPAlgorithm() : ConstModIPAlgorithm
• ConstModOPAlgorithm() : ConstModOPAlgorithm
• ConstSequenceHandle() : ConstSequenceHandle
• ConstSequenceList() : ConstSequenceList
• Contact() : Contact
• ContactPredictionScoreResult() : ContactPredictionScoreResult
• contacts() : QSscoreEntity
• contacts_ca() : QSscoreEntity
• ContactWeightMatrix() : ContactWeightMatrix
• Contains() : AminoAcidSet , Extent , ResidueNames
• ContainsParam() : StereoChemicalParams
• ContextMenu() : ContextMenu
• contextMenuEvent() : GradientPresetWidget , PresetEditor , PresetWidget
• ContextMenuRequested() : SceneWin
• ContextSwitch() : GfxNode , GfxObj , GfxObjBase
• ConversionExists() : GromacsData
• Convert() : NoOpNormalizer , Normalizer
• convert() : PairToTupleConverter< T1, T2 > , VectorToListConverter< T >
• Convert() : ViewerNormalizer , NoOpNormalizer , LinearNormalizer , TransmissionToODNormalizer , LinearNormalizer , LinearRangeNormalizer , LogRangeNormalizer , Normalizer , LogNormalizer , LogRangeNormalizer , TransmissionToODNormalizer , LinearRangeNormalizer , NormalizeFnc , LogNormalizer , ViewerNormalizer
• ConvertSEQRES() : MMCifReader
• ConvertToGfxGradient() : ImmutableGradientInfoHandler
• ConvertToQGradient() : ImmutableGradientInfoHandler
• ConvertToStandard() : GromacsData
• Coord2Point() : PixelSampling
• CoordFrame() : CoordFrame
• CoordGroupHandle() : CoordGroupHandle
• CoordSource() : CoordSource
• CoordToIndex() : ImageHandle , ImageStateBase , ConstImageHandle , ImageStateImpl< T, D >
• Copy() : SequenceHandle , EntityView , AlignmentHandle , IOProfile , ConstImageHandle , Database , CompoundLib , ConstSequenceHandle , IOProfile , HeuristicProcessor , RuleBasedProcessor , GfxNode , InfoHandle , InfoImpl , EntityHandle , SequenceImpl , Processor , GfxObj , ImageHandle , EntityImpl , SequenceListImpl
• CopyEvent() : SequenceTableView
• CopyFrame() : CoordSource , CoordGroupHandle
• copyParametersToContext() : CalcDensityForceKernel , ReferenceCalcDensityForceKernel
• CopySelectionToClipboard() : GLCanvas
• Correl() : Table
• CosFnc() : CosFnc
• Count() : Table
• CPKRenderer() : CPKRenderer
• CPKRenderOptions() : CPKRenderOptions
• CRDReader() : CRDReader
• CRDWriter() : CRDWriter
• Create() : SystemCreator , ImageHandle , ProfileIOHandlerFactoryBase , SequenceIOHandlerFactoryBase , DistanceMatrix , MapIOHandlerFactoryBase , ProfileIOHandlerFactoryBase , WidgetRegistry , WidgetPool , EntityIOHandlerFactoryBase , SurfaceIOHandlerFactoryBase , TopologyCreator , CompoundLib , EntityIOHandlerFactoryBase , SurfaceIOHandlerFactoryBase , WidgetFactory , MapIOHandlerFactoryBase
• create_error() : _TestInfo
• create_failure() : _TestInfo
• create_op_() : CompositeMask
• create_success() : _TestInfo
• CreateApolarSet() : AminoAcidSet
• CreateAromaticSet() : AminoAcidSet
• CreateAtom() : EntityImpl
• CreateCompleteSet() : AminoAcidSet
• CreateContextMenu() : GradientPresetWidget , PresetWidget , PresetEditor
• CreateDataViewer() : GostyApp
• CreateEmptyView() : EntityView , EntityHandle
• CreateEntity() : EntityHandle
• CreateFullView() : EntityView , EntityHandle , EntityImpl
• CreateGroup() : InfoHandle , InfoGroup
• createHandle() : ThinSplitter
• CreateImmutableContextMenu() : GradientPresetWidget , PresetWidget
• createImpl() : DensityForce
• CreateItem() : InfoHandle , InfoGroup
• createKernelImpl() : ReferenceDensityKernelFactory
• CreateLink() : AdminRights
• CreatePolarSet() : AminoAcidSet
• CreatePseudoSet() : AminoAcidSet
• CreateQueryState() : QueryImpl , Query , QueryImpl
• CreateResidue() : EntityImpl
• CreateSet() : AminoAcidSet
• CreateSub() : EleImpl
• CreateSubset() : BackboneTrace
• CreateThreeStateSet() : AminoAcidSet
• CreateViewFromAtomList() : EntityView
• Crop() : NullData
• CrossCorrelate() : CrossCorrelate
• CrosshairBaseDrawingStrategy() : CrosshairBaseDrawingStrategy
• CrosshairCircleDrawingStrategy() : CrosshairCircleDrawingStrategy
• CrosshairSquareDrawingStrategy() : CrosshairSquareDrawingStrategy
• Cuboid() : Cuboid
• CuboidAxis() : CuboidAxis
• CurrentSelectionNode() : CurrentSelectionNode
• CurrentToken() : PythonTokenizer , QueryLexer
• CustomPartNode() : CustomPartNode
• CustomPreRenderGL() : MapSlab , PrimList , GfxObj , MapIso , Entity , Surface , PyGfxObj
• CustomRenderer() : CustomRenderer
• CustomRenderGL() : Entity , Surface , MapSlab , GfxTestObj , PyGfxObj , MapIso , GfxObj , PrimList
• CustomRenderOptions() : CustomRenderOptions
• CustomRenderPov() : GfxObj , Surface , PrimList , MapSlab , MapIso , Entity
• Cut() : AlignmentHandle , SequenceImpl
• CylinderPrim() : CylinderPrim